Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.41■□□□□ 0.7
TTC28Q96AY4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.41■□□□□ 0.7
TTC28Q96AY4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.41■□□□□ 0.7
TTC28Q96AY4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.41■□□□□ 0.7
TTC28Q96AY4 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC19.41■□□□□ 0.7
TTC28Q96AY4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.41■□□□□ 0.7
TTC28Q96AY4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TTC28Q96AY4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TTC28Q96AY4 C1orf229-201ENST00000623686 2258 ntBASIC19.4■□□□□ 0.7
TTC28Q96AY4 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TTC28Q96AY4 PAWRP1-201ENST00000451083 565 ntBASIC19.4■□□□□ 0.7
TTC28Q96AY4 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TTC28Q96AY4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 AC005336.2-201ENST00000593183 939 ntBASIC19.4■□□□□ 0.7
TTC28Q96AY4 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TTC28Q96AY4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TTC28Q96AY4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.4■□□□□ 0.7
TTC28Q96AY4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TTC28Q96AY4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
TTC28Q96AY4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TTC28Q96AY4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 KRT18P23-201ENST00000435622 1283 ntBASIC19.39■□□□□ 0.69
TTC28Q96AY4 AC009533.2-201ENST00000543664 586 ntBASIC19.39■□□□□ 0.69
TTC28Q96AY4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TTC28Q96AY4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.39■□□□□ 0.69
TTC28Q96AY4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.39■□□□□ 0.69
TTC28Q96AY4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.39■□□□□ 0.69
TTC28Q96AY4 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TTC28Q96AY4 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.39■□□□□ 0.69
TTC28Q96AY4 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.39■□□□□ 0.69
TTC28Q96AY4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.39■□□□□ 0.69
TTC28Q96AY4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TTC28Q96AY4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TTC28Q96AY4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TTC28Q96AY4 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TTC28Q96AY4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TTC28Q96AY4 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
TTC28Q96AY4 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.38■□□□□ 0.69
TTC28Q96AY4 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TTC28Q96AY4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
TTC28Q96AY4 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.38■□□□□ 0.69
TTC28Q96AY4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TTC28Q96AY4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TTC28Q96AY4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TTC28Q96AY4 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TTC28Q96AY4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.38■□□□□ 0.69
TTC28Q96AY4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TTC28Q96AY4 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.37■□□□□ 0.69
TTC28Q96AY4 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.37■□□□□ 0.69
TTC28Q96AY4 SNHG9-202ENST00000564014 471 ntBASIC19.37■□□□□ 0.69
TTC28Q96AY4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TTC28Q96AY4 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.37■□□□□ 0.69
TTC28Q96AY4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.37■□□□□ 0.69
TTC28Q96AY4 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.37■□□□□ 0.69
TTC28Q96AY4 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.37■□□□□ 0.69
TTC28Q96AY4 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TTC28Q96AY4 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms