Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CCDC60Q8IWA6 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 YBX1P2-201ENST00000489612 999 ntBASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC60Q8IWA6 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CCDC60Q8IWA6 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.99
CCDC60Q8IWA6 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 COX11P1-201ENST00000489116 835 ntBASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 NTF6B-201ENST00000591913 560 ntBASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.2■□□□□ 0.98
CCDC60Q8IWA6 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 AL512604.3-201ENST00000569583 964 ntBASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 AC007952.6-201ENST00000573168 2673 ntBASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 AC003957.1-201ENST00000625108 2673 ntBASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 AC093484.2-201ENST00000580996 2166 ntBASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC60Q8IWA6 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 GPAT2P1-201ENST00000444924 1672 ntBASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 ARMC10P1-201ENST00000313754 855 ntBASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 AC063952.2-201ENST00000498792 1227 ntBASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 AC022616.7-201ENST00000525383 220 ntBASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC60Q8IWA6 AC011558.1-201ENST00000623459 338 ntBASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms