Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK3Q8IV63 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.67■□□□□ 0.58
VRK3Q8IV63 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 AC018445.3-201ENST00000624177 1945 ntBASIC18.66■□□□□ 0.58
VRK3Q8IV63 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK3Q8IV63 AC079598.2-202ENST00000546624 1451 ntBASIC18.66■□□□□ 0.58
VRK3Q8IV63 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK3Q8IV63 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK3Q8IV63 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK3Q8IV63 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VRK3Q8IV63 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.66■□□□□ 0.58
VRK3Q8IV63 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 PRSS44-201ENST00000515154 1146 ntBASIC18.65■□□□□ 0.58
VRK3Q8IV63 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 CKBP1-201ENST00000565489 1086 ntBASIC18.65■□□□□ 0.58
VRK3Q8IV63 SLC25A1P4-201ENST00000567977 778 ntBASIC18.65■□□□□ 0.58
VRK3Q8IV63 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VRK3Q8IV63 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.65■□□□□ 0.58
VRK3Q8IV63 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
VRK3Q8IV63 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.64■□□□□ 0.58
VRK3Q8IV63 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.64■□□□□ 0.58
VRK3Q8IV63 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VRK3Q8IV63 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VRK3Q8IV63 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK3Q8IV63 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK3Q8IV63 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK3Q8IV63 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 AC097488.1-201ENST00000507834 756 ntBASIC18.64■□□□□ 0.57
VRK3Q8IV63 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VRK3Q8IV63 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 AP000525.1-201ENST00000608286 694 ntBASIC18.64■□□□□ 0.57
VRK3Q8IV63 DGCR10-201ENST00000609839 495 ntBASIC18.64■□□□□ 0.57
VRK3Q8IV63 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 KRT17P2-201ENST00000300992 1314 ntBASIC18.64■□□□□ 0.57
VRK3Q8IV63 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.64■□□□□ 0.57
VRK3Q8IV63 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VRK3Q8IV63 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.63■□□□□ 0.57
VRK3Q8IV63 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
VRK3Q8IV63 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
VRK3Q8IV63 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 AL390955.1-201ENST00000428694 934 ntBASIC18.63■□□□□ 0.57
VRK3Q8IV63 MFAP1P1-201ENST00000442257 1255 ntBASIC18.63■□□□□ 0.57
VRK3Q8IV63 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.63■□□□□ 0.57
VRK3Q8IV63 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
VRK3Q8IV63 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
VRK3Q8IV63 AC096733.2-201ENST00000609937 1394 ntBASIC18.63■□□□□ 0.57
VRK3Q8IV63 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VRK3Q8IV63 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms