Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PEX3P56589 AC133561.5-201ENST00000635547 218 ntBASIC21.03■□□□□ 0.96
PEX3P56589 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
PEX3P56589 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PEX3P56589 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
PEX3P56589 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.03■□□□□ 0.96
PEX3P56589 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.03■□□□□ 0.96
PEX3P56589 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
PEX3P56589 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PEX3P56589 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PEX3P56589 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.03■□□□□ 0.96
PEX3P56589 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PEX3P56589 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PEX3P56589 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC21.03■□□□□ 0.96
PEX3P56589 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.02■□□□□ 0.96
PEX3P56589 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.02■□□□□ 0.96
PEX3P56589 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.02■□□□□ 0.96
PEX3P56589 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 IRX1P1-201ENST00000438849 1838 ntBASIC21.02■□□□□ 0.96
PEX3P56589 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.02■□□□□ 0.96
PEX3P56589 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
PEX3P56589 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.02■□□□□ 0.96
PEX3P56589 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.02■□□□□ 0.96
PEX3P56589 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.02■□□□□ 0.96
PEX3P56589 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.02■□□□□ 0.96
PEX3P56589 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
PEX3P56589 NAPSB-206ENST00000562112 1266 ntBASIC21.02■□□□□ 0.96
PEX3P56589 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
PEX3P56589 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
PEX3P56589 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
PEX3P56589 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
PEX3P56589 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PEX3P56589 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
PEX3P56589 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
PEX3P56589 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.02■□□□□ 0.95
PEX3P56589 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
PEX3P56589 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.02■□□□□ 0.95
PEX3P56589 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.01■□□□□ 0.95
PEX3P56589 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PEX3P56589 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.01■□□□□ 0.95
PEX3P56589 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.01■□□□□ 0.95
PEX3P56589 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PEX3P56589 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PEX3P56589 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PEX3P56589 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.01■□□□□ 0.95
PEX3P56589 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
PEX3P56589 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PEX3P56589 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PEX3P56589 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PEX3P56589 AC211429.1-201ENST00000415277 523 ntBASIC21.01■□□□□ 0.95
PEX3P56589 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.01■□□□□ 0.95
PEX3P56589 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PEX3P56589 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.01■□□□□ 0.95
PEX3P56589 C2orf69P3-201ENST00000565542 1120 ntBASIC21.01■□□□□ 0.95
PEX3P56589 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.01■□□□□ 0.95
PEX3P56589 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.01■□□□□ 0.95
PEX3P56589 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PEX3P56589 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21■□□□□ 0.95
PEX3P56589 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21■□□□□ 0.95
PEX3P56589 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21■□□□□ 0.95
PEX3P56589 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21■□□□□ 0.95
PEX3P56589 HIST1H2APS4-201ENST00000362070 348 ntBASIC21■□□□□ 0.95
PEX3P56589 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21■□□□□ 0.95
PEX3P56589 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21■□□□□ 0.95
PEX3P56589 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21■□□□□ 0.95
PEX3P56589 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21■□□□□ 0.95
PEX3P56589 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
PEX3P56589 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21■□□□□ 0.95
PEX3P56589 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21■□□□□ 0.95
PEX3P56589 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PEX3P56589 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
PEX3P56589 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PEX3P56589 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PEX3P56589 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PEX3P56589 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.99■□□□□ 0.95
PEX3P56589 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PEX3P56589 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PEX3P56589 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
PEX3P56589 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.99■□□□□ 0.95
PEX3P56589 FEM1AP3-201ENST00000403722 1741 ntBASIC20.99■□□□□ 0.95
PEX3P56589 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.99■□□□□ 0.95
PEX3P56589 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PEX3P56589 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.99■□□□□ 0.95
PEX3P56589 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.99■□□□□ 0.95
PEX3P56589 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PEX3P56589 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.99■□□□□ 0.95
PEX3P56589 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.99■□□□□ 0.95
PEX3P56589 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms