Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.71■□□□□ 0.59
PKNOX1P55347 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.71■□□□□ 0.59
PKNOX1P55347 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.71■□□□□ 0.58
PKNOX1P55347 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.71■□□□□ 0.58
PKNOX1P55347 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PKNOX1P55347 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.7■□□□□ 0.58
PKNOX1P55347 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.7■□□□□ 0.58
PKNOX1P55347 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.7■□□□□ 0.58
PKNOX1P55347 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.7■□□□□ 0.58
PKNOX1P55347 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.7■□□□□ 0.58
PKNOX1P55347 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.7■□□□□ 0.58
PKNOX1P55347 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.7■□□□□ 0.58
PKNOX1P55347 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.7■□□□□ 0.58
PKNOX1P55347 AC098934.4-201ENST00000564127 592 ntBASIC18.7■□□□□ 0.58
PKNOX1P55347 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.7■□□□□ 0.58
PKNOX1P55347 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PKNOX1P55347 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.7■□□□□ 0.58
PKNOX1P55347 AC133041.1-202ENST00000642053 222 ntBASIC18.7■□□□□ 0.58
PKNOX1P55347 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 AL133373.2-201ENST00000623187 2828 ntBASIC18.7■□□□□ 0.58
PKNOX1P55347 AL390961.4-201ENST00000623958 2535 ntBASIC18.7■□□□□ 0.58
PKNOX1P55347 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.7■□□□□ 0.58
PKNOX1P55347 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
PKNOX1P55347 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PKNOX1P55347 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.7■□□□□ 0.58
PKNOX1P55347 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PKNOX1P55347 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
PKNOX1P55347 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.69■□□□□ 0.58
PKNOX1P55347 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.69■□□□□ 0.58
PKNOX1P55347 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.69■□□□□ 0.58
PKNOX1P55347 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.69■□□□□ 0.58
PKNOX1P55347 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.69■□□□□ 0.58
PKNOX1P55347 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PKNOX1P55347 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.69■□□□□ 0.58
PKNOX1P55347 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.69■□□□□ 0.58
PKNOX1P55347 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 FP475955.4-201ENST00000623131 1990 ntBASIC18.69■□□□□ 0.58
PKNOX1P55347 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.69■□□□□ 0.58
PKNOX1P55347 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
PKNOX1P55347 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
PKNOX1P55347 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.69■□□□□ 0.58
PKNOX1P55347 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PKNOX1P55347 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.69■□□□□ 0.58
PKNOX1P55347 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PKNOX1P55347 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 AC069152.1-201ENST00000438030 544 ntBASIC18.68■□□□□ 0.58
PKNOX1P55347 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.68■□□□□ 0.58
PKNOX1P55347 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.68■□□□□ 0.58
PKNOX1P55347 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.68■□□□□ 0.58
PKNOX1P55347 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PKNOX1P55347 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.68■□□□□ 0.58
PKNOX1P55347 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PKNOX1P55347 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.68■□□□□ 0.58
PKNOX1P55347 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.68■□□□□ 0.58
PKNOX1P55347 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PKNOX1P55347 FZD10-202ENST00000539839 3282 ntBASIC18.68■□□□□ 0.58
PKNOX1P55347 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.67■□□□□ 0.58
PKNOX1P55347 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PKNOX1P55347 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.67■□□□□ 0.58
PKNOX1P55347 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.67■□□□□ 0.58
PKNOX1P55347 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PKNOX1P55347 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms