Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
RFX3P48380 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
RFX3P48380 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.92■□□□□ 0.46
RFX3P48380 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
RFX3P48380 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.92■□□□□ 0.46
RFX3P48380 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.92■□□□□ 0.46
RFX3P48380 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.92■□□□□ 0.46
RFX3P48380 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.92■□□□□ 0.46
RFX3P48380 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.92■□□□□ 0.46
RFX3P48380 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.92■□□□□ 0.46
RFX3P48380 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
RFX3P48380 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.92■□□□□ 0.46
RFX3P48380 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.92■□□□□ 0.46
RFX3P48380 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.92■□□□□ 0.46
RFX3P48380 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
RFX3P48380 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
RFX3P48380 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.92■□□□□ 0.46
RFX3P48380 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
RFX3P48380 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.92■□□□□ 0.46
RFX3P48380 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.92■□□□□ 0.46
RFX3P48380 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
RFX3P48380 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
RFX3P48380 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.91■□□□□ 0.46
RFX3P48380 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.91■□□□□ 0.46
RFX3P48380 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.91■□□□□ 0.46
RFX3P48380 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.91■□□□□ 0.46
RFX3P48380 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
RFX3P48380 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.91■□□□□ 0.46
RFX3P48380 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
RFX3P48380 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.91■□□□□ 0.46
RFX3P48380 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
RFX3P48380 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
RFX3P48380 KRT16P5-201ENST00000455284 522 ntBASIC17.91■□□□□ 0.46
RFX3P48380 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 AC142381.4-202ENST00000563973 229 ntBASIC17.91■□□□□ 0.46
RFX3P48380 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.91■□□□□ 0.46
RFX3P48380 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.91■□□□□ 0.46
RFX3P48380 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
RFX3P48380 SDHAP1-207ENST00000440850 2000 ntBASIC17.91■□□□□ 0.46
RFX3P48380 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RFX3P48380 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.9■□□□□ 0.46
RFX3P48380 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.9■□□□□ 0.46
RFX3P48380 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.9■□□□□ 0.46
RFX3P48380 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
RFX3P48380 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.9■□□□□ 0.46
RFX3P48380 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
RFX3P48380 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.9■□□□□ 0.46
RFX3P48380 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.9■□□□□ 0.46
RFX3P48380 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.9■□□□□ 0.46
RFX3P48380 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.9■□□□□ 0.46
RFX3P48380 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.9■□□□□ 0.46
RFX3P48380 AL359736.2-201ENST00000621992 437 ntBASIC17.9■□□□□ 0.46
RFX3P48380 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
RFX3P48380 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.9■□□□□ 0.46
RFX3P48380 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
RFX3P48380 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.9■□□□□ 0.46
RFX3P48380 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
RFX3P48380 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.9■□□□□ 0.46
RFX3P48380 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.9■□□□□ 0.46
RFX3P48380 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RFX3P48380 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
RFX3P48380 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
RFX3P48380 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RFX3P48380 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.89■□□□□ 0.45
RFX3P48380 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.89■□□□□ 0.45
RFX3P48380 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
RFX3P48380 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms