Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CIITAP33076 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CIITAP33076 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CIITAP33076 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.51■■□□□ 1.03
CIITAP33076 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CIITAP33076 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.51■■□□□ 1.03
CIITAP33076 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.51■■□□□ 1.03
CIITAP33076 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CIITAP33076 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.51■■□□□ 1.03
CIITAP33076 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CIITAP33076 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CIITAP33076 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CIITAP33076 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.5■■□□□ 1.03
CIITAP33076 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.5■■□□□ 1.03
CIITAP33076 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 SLC25A3P1-201ENST00000443844 931 ntBASIC21.5■■□□□ 1.03
CIITAP33076 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.5■■□□□ 1.03
CIITAP33076 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.5■■□□□ 1.03
CIITAP33076 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.5■■□□□ 1.03
CIITAP33076 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CIITAP33076 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CIITAP33076 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CIITAP33076 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CIITAP33076 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CIITAP33076 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.49■■□□□ 1.03
CIITAP33076 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.49■■□□□ 1.03
CIITAP33076 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.49■■□□□ 1.03
CIITAP33076 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.49■■□□□ 1.03
CIITAP33076 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CIITAP33076 AC008622.2-201ENST00000617006 1229 ntBASIC21.49■■□□□ 1.03
CIITAP33076 AC005363.2-201ENST00000618631 242 ntBASIC21.49■■□□□ 1.03
CIITAP33076 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.49■■□□□ 1.03
CIITAP33076 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.49■■□□□ 1.03
CIITAP33076 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CIITAP33076 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.49■■□□□ 1.03
CIITAP33076 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.49■■□□□ 1.03
CIITAP33076 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CIITAP33076 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.49■■□□□ 1.03
CIITAP33076 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
CIITAP33076 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.49■■□□□ 1.03
CIITAP33076 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CIITAP33076 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CIITAP33076 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.48■■□□□ 1.03
CIITAP33076 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CIITAP33076 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CIITAP33076 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CIITAP33076 AC073508.3-201ENST00000619697 1419 ntBASIC21.48■■□□□ 1.03
CIITAP33076 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
CIITAP33076 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.48■■□□□ 1.03
CIITAP33076 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CIITAP33076 AC113347.1-201ENST00000413321 391 ntBASIC21.48■■□□□ 1.03
CIITAP33076 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CIITAP33076 AP003041.3-201ENST00000527151 707 ntBASIC21.48■■□□□ 1.03
CIITAP33076 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.48■■□□□ 1.03
CIITAP33076 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.48■■□□□ 1.03
CIITAP33076 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CIITAP33076 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CIITAP33076 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.48■■□□□ 1.03
CIITAP33076 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.47■■□□□ 1.03
CIITAP33076 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 HMGA1P5-201ENST00000412453 271 ntBASIC21.47■■□□□ 1.03
CIITAP33076 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.47■■□□□ 1.03
CIITAP33076 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.47■■□□□ 1.03
CIITAP33076 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.47■■□□□ 1.03
CIITAP33076 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
CIITAP33076 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CIITAP33076 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CIITAP33076 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.46■■□□□ 1.03
CIITAP33076 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.46■■□□□ 1.03
CIITAP33076 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.46■■□□□ 1.03
CIITAP33076 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.46■■□□□ 1.03
CIITAP33076 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.46■■□□□ 1.03
CIITAP33076 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CIITAP33076 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms