Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.95■□□□□ 0.78
COL6A3P12111 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
COL6A3P12111 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 YBX1P5-201ENST00000509441 847 ntBASIC19.95■□□□□ 0.78
COL6A3P12111 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.95■□□□□ 0.78
COL6A3P12111 AC090616.6-201ENST00000582640 721 ntBASIC19.95■□□□□ 0.78
COL6A3P12111 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A3P12111 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL6A3P12111 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A3P12111 AC002347.1-201ENST00000569543 541 ntBASIC19.95■□□□□ 0.78
COL6A3P12111 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
COL6A3P12111 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A3P12111 AL157888.1-201ENST00000631930 593 ntBASIC19.95■□□□□ 0.78
COL6A3P12111 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
COL6A3P12111 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A3P12111 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.94■□□□□ 0.78
COL6A3P12111 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC19.94■□□□□ 0.78
COL6A3P12111 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A3P12111 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A3P12111 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.94■□□□□ 0.78
COL6A3P12111 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.94■□□□□ 0.78
COL6A3P12111 AC008608.2-201ENST00000606089 416 ntBASIC19.94■□□□□ 0.78
COL6A3P12111 KRT8P11-201ENST00000409686 1436 ntBASIC19.94■□□□□ 0.78
COL6A3P12111 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A3P12111 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
COL6A3P12111 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.94■□□□□ 0.78
COL6A3P12111 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
COL6A3P12111 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.94■□□□□ 0.78
COL6A3P12111 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.94■□□□□ 0.78
COL6A3P12111 AL355877.3-201ENST00000622820 899 ntBASIC19.94■□□□□ 0.78
COL6A3P12111 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A3P12111 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A3P12111 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A3P12111 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.94■□□□□ 0.78
COL6A3P12111 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.93■□□□□ 0.78
COL6A3P12111 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.93■□□□□ 0.78
COL6A3P12111 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.93■□□□□ 0.78
COL6A3P12111 BNIP3P18-201ENST00000593976 575 ntBASIC19.93■□□□□ 0.78
COL6A3P12111 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.93■□□□□ 0.78
COL6A3P12111 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A3P12111 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.93■□□□□ 0.78
COL6A3P12111 GSAP-205ENST00000430584 600 ntTSL 5 BASIC19.93■□□□□ 0.78
COL6A3P12111 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.93■□□□□ 0.78
COL6A3P12111 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.93■□□□□ 0.78
COL6A3P12111 AC063926.2-201ENST00000623766 1308 ntBASIC19.92■□□□□ 0.78
COL6A3P12111 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL6A3P12111 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
COL6A3P12111 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
COL6A3P12111 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
COL6A3P12111 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL6A3P12111 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
COL6A3P12111 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL6A3P12111 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL6A3P12111 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
COL6A3P12111 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.92■□□□□ 0.78
COL6A3P12111 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.92■□□□□ 0.78
COL6A3P12111 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL6A3P12111 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL6A3P12111 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.91■□□□□ 0.78
COL6A3P12111 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.91■□□□□ 0.78
COL6A3P12111 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
COL6A3P12111 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.91■□□□□ 0.78
COL6A3P12111 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL6A3P12111 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
COL6A3P12111 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL6A3P12111 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.91■□□□□ 0.78
COL6A3P12111 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL6A3P12111 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.91■□□□□ 0.78
COL6A3P12111 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL6A3P12111 TREX1-205ENST00000625293 1783 ntBASIC19.91■□□□□ 0.78
COL6A3P12111 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL6A3P12111 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.91■□□□□ 0.78
COL6A3P12111 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.91■□□□□ 0.78
COL6A3P12111 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
COL6A3P12111 MTDHP5-201ENST00000598980 586 ntBASIC19.91■□□□□ 0.78
COL6A3P12111 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL6A3P12111 GPAT2P1-201ENST00000444924 1672 ntBASIC19.91■□□□□ 0.78
COL6A3P12111 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A3P12111 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A3P12111 AC009533.2-201ENST00000543664 586 ntBASIC19.9■□□□□ 0.78
COL6A3P12111 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A3P12111 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A3P12111 RPS2P28-201ENST00000314255 741 ntBASIC19.9■□□□□ 0.78
COL6A3P12111 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms