Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHRNA1P02708 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHRNA1P02708 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.77■□□□□ 0.92
CHRNA1P02708 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.77■□□□□ 0.92
CHRNA1P02708 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CHRNA1P02708 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.77■□□□□ 0.92
CHRNA1P02708 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHRNA1P02708 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.77■□□□□ 0.92
CHRNA1P02708 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHRNA1P02708 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CHRNA1P02708 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CHRNA1P02708 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.77■□□□□ 0.91
CHRNA1P02708 AC036111.1-201ENST00000533973 1582 ntBASIC20.76■□□□□ 0.91
CHRNA1P02708 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.76■□□□□ 0.91
CHRNA1P02708 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA1P02708 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA1P02708 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA1P02708 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA1P02708 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA1P02708 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA1P02708 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.76■□□□□ 0.91
CHRNA1P02708 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.76■□□□□ 0.91
CHRNA1P02708 CLEC4GP1-201ENST00000596555 870 ntBASIC20.76■□□□□ 0.91
CHRNA1P02708 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.76■□□□□ 0.91
CHRNA1P02708 AC024243.1-201ENST00000609234 778 ntBASIC20.76■□□□□ 0.91
CHRNA1P02708 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.76■□□□□ 0.91
CHRNA1P02708 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.76■□□□□ 0.91
CHRNA1P02708 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA1P02708 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.76■□□□□ 0.91
CHRNA1P02708 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.76■□□□□ 0.91
CHRNA1P02708 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA1P02708 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CHRNA1P02708 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHRNA1P02708 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.76■□□□□ 0.91
CHRNA1P02708 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA1P02708 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA1P02708 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA1P02708 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.75■□□□□ 0.91
CHRNA1P02708 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA1P02708 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA1P02708 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.75■□□□□ 0.91
CHRNA1P02708 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA1P02708 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA1P02708 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHRNA1P02708 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.75■□□□□ 0.91
CHRNA1P02708 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA1P02708 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA1P02708 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.74■□□□□ 0.91
CHRNA1P02708 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA1P02708 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CHRNA1P02708 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA1P02708 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA1P02708 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CHRNA1P02708 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CHRNA1P02708 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.74■□□□□ 0.91
CHRNA1P02708 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CHRNA1P02708 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA1P02708 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.74■□□□□ 0.91
CHRNA1P02708 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CHRNA1P02708 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHRNA1P02708 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.74■□□□□ 0.91
CHRNA1P02708 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.73■□□□□ 0.91
CHRNA1P02708 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.73■□□□□ 0.91
CHRNA1P02708 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 ATP5G2P1-201ENST00000433580 426 ntBASIC20.73■□□□□ 0.91
CHRNA1P02708 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.73■□□□□ 0.91
CHRNA1P02708 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.73■□□□□ 0.91
CHRNA1P02708 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CHRNA1P02708 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CHRNA1P02708 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.73■□□□□ 0.91
CHRNA1P02708 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.73■□□□□ 0.91
CHRNA1P02708 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.72■□□□□ 0.91
CHRNA1P02708 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.72■□□□□ 0.91
CHRNA1P02708 KRT8P3-201ENST00000519669 1449 ntBASIC20.72■□□□□ 0.91
CHRNA1P02708 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.72■□□□□ 0.91
CHRNA1P02708 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.72■□□□□ 0.91
CHRNA1P02708 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHRNA1P02708 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.72■□□□□ 0.91
CHRNA1P02708 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.72■□□□□ 0.91
CHRNA1P02708 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.72■□□□□ 0.91
CHRNA1P02708 AC034232.1-201ENST00000506026 1064 ntBASIC20.72■□□□□ 0.91
CHRNA1P02708 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHRNA1P02708 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms