Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL2A1P02458 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL2A1P02458 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.31■■□□□ 1.16
COL2A1P02458 AC125437.2-201ENST00000625180 2167 ntBASIC22.31■■□□□ 1.16
COL2A1P02458 HOXB1-202ENST00000577092 1414 ntBASIC22.31■■□□□ 1.16
COL2A1P02458 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.31■■□□□ 1.16
COL2A1P02458 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC22.3■■□□□ 1.16
COL2A1P02458 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC22.3■■□□□ 1.16
COL2A1P02458 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
COL2A1P02458 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC22.3■■□□□ 1.16
COL2A1P02458 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC22.3■■□□□ 1.16
COL2A1P02458 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 AC024243.1-201ENST00000609234 778 ntBASIC22.3■■□□□ 1.16
COL2A1P02458 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC22.3■■□□□ 1.16
COL2A1P02458 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC22.3■■□□□ 1.16
COL2A1P02458 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.3■■□□□ 1.16
COL2A1P02458 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
COL2A1P02458 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC22.3■■□□□ 1.16
COL2A1P02458 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC22.3■■□□□ 1.16
COL2A1P02458 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL2A1P02458 PWWP2AP1-201ENST00000429776 2273 ntBASIC22.29■■□□□ 1.16
COL2A1P02458 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL2A1P02458 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL2A1P02458 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC22.29■■□□□ 1.16
COL2A1P02458 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
COL2A1P02458 TPM4P1-201ENST00000436100 807 ntBASIC22.29■■□□□ 1.16
COL2A1P02458 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
COL2A1P02458 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC22.29■■□□□ 1.16
COL2A1P02458 AC092597.1-201ENST00000487352 616 ntBASIC22.29■■□□□ 1.16
COL2A1P02458 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC22.29■■□□□ 1.16
COL2A1P02458 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC22.29■■□□□ 1.16
COL2A1P02458 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC22.29■■□□□ 1.16
COL2A1P02458 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC22.29■■□□□ 1.16
COL2A1P02458 CLDN5-201ENST00000403084 2357 ntBASIC22.29■■□□□ 1.16
COL2A1P02458 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC22.29■■□□□ 1.16
COL2A1P02458 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL2A1P02458 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
COL2A1P02458 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL2A1P02458 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL2A1P02458 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL2A1P02458 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
COL2A1P02458 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC22.28■■□□□ 1.16
COL2A1P02458 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC22.28■■□□□ 1.16
COL2A1P02458 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
COL2A1P02458 HLA-F-220ENST00000434407 884 ntBASIC22.28■■□□□ 1.16
COL2A1P02458 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC22.28■■□□□ 1.16
COL2A1P02458 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC22.28■■□□□ 1.16
COL2A1P02458 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC22.28■■□□□ 1.16
COL2A1P02458 MIR3917-201ENST00000580971 93 ntBASIC22.28■■□□□ 1.16
COL2A1P02458 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC22.28■■□□□ 1.16
COL2A1P02458 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC22.28■■□□□ 1.16
COL2A1P02458 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 KATNBL1P6-202ENST00000562413 1466 ntBASIC22.28■■□□□ 1.16
COL2A1P02458 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC22.28■■□□□ 1.16
COL2A1P02458 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
COL2A1P02458 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC22.28■■□□□ 1.16
COL2A1P02458 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC22.28■■□□□ 1.16
COL2A1P02458 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL2A1P02458 ENSA-205ENST00000361532 792 ntTSL 2 BASIC22.28■■□□□ 1.16
COL2A1P02458 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC22.28■■□□□ 1.16
COL2A1P02458 GRAMD4P1-201ENST00000435181 1110 ntBASIC22.28■■□□□ 1.16
COL2A1P02458 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC22.28■■□□□ 1.16
COL2A1P02458 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC22.28■■□□□ 1.16
COL2A1P02458 AC112497.1-201ENST00000624824 639 ntBASIC22.28■■□□□ 1.16
COL2A1P02458 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
COL2A1P02458 KRT8P7-201ENST00000533003 1432 ntBASIC22.27■■□□□ 1.16
COL2A1P02458 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL2A1P02458 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
COL2A1P02458 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL2A1P02458 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC22.27■■□□□ 1.16
COL2A1P02458 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL2A1P02458 AL512353.2-201ENST00000448759 1962 ntBASIC22.27■■□□□ 1.16
COL2A1P02458 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL2A1P02458 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL2A1P02458 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC22.27■■□□□ 1.16
COL2A1P02458 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL2A1P02458 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC22.27■■□□□ 1.16
COL2A1P02458 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL2A1P02458 RCC2P3-201ENST00000418112 1537 ntBASIC22.27■■□□□ 1.16
COL2A1P02458 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms