Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LDB3O75112 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDB3O75112 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.96■□□□□ 0.46
LDB3O75112 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
LDB3O75112 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
LDB3O75112 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
LDB3O75112 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 AL049812.1-201ENST00000432563 2267 ntBASIC17.95■□□□□ 0.46
LDB3O75112 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.95■□□□□ 0.46
LDB3O75112 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 UNC93B2-201ENST00000285383 730 ntBASIC17.95■□□□□ 0.46
LDB3O75112 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LDB3O75112 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.95■□□□□ 0.46
LDB3O75112 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.95■□□□□ 0.46
LDB3O75112 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.95■□□□□ 0.46
LDB3O75112 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 SLC25A1P4-201ENST00000567977 778 ntBASIC17.95■□□□□ 0.46
LDB3O75112 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.95■□□□□ 0.46
LDB3O75112 AP000692.2-201ENST00000608391 879 ntBASIC17.95■□□□□ 0.46
LDB3O75112 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 AL161938.1-201ENST00000569833 2180 ntBASIC17.95■□□□□ 0.46
LDB3O75112 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.95■□□□□ 0.46
LDB3O75112 IRX1P1-201ENST00000438849 1838 ntBASIC17.95■□□□□ 0.46
LDB3O75112 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDB3O75112 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
LDB3O75112 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.95■□□□□ 0.46
LDB3O75112 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.95■□□□□ 0.46
LDB3O75112 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.95■□□□□ 0.46
LDB3O75112 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
LDB3O75112 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.94■□□□□ 0.46
LDB3O75112 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.94■□□□□ 0.46
LDB3O75112 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
LDB3O75112 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.94■□□□□ 0.46
LDB3O75112 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LDB3O75112 AC097488.1-201ENST00000507834 756 ntBASIC17.94■□□□□ 0.46
LDB3O75112 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.94■□□□□ 0.46
LDB3O75112 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.94■□□□□ 0.46
LDB3O75112 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.94■□□□□ 0.46
LDB3O75112 AP000525.1-201ENST00000608286 694 ntBASIC17.94■□□□□ 0.46
LDB3O75112 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.94■□□□□ 0.46
LDB3O75112 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.94■□□□□ 0.46
LDB3O75112 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
LDB3O75112 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.94■□□□□ 0.46
LDB3O75112 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 AC079598.2-202ENST00000546624 1451 ntBASIC17.94■□□□□ 0.46
LDB3O75112 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDB3O75112 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
LDB3O75112 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.93■□□□□ 0.46
LDB3O75112 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
LDB3O75112 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.93■□□□□ 0.46
LDB3O75112 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LDB3O75112 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.93■□□□□ 0.46
LDB3O75112 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.93■□□□□ 0.46
LDB3O75112 DGCR10-201ENST00000609839 495 ntBASIC17.93■□□□□ 0.46
LDB3O75112 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.93■□□□□ 0.46
LDB3O75112 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LDB3O75112 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.93■□□□□ 0.46
LDB3O75112 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.93■□□□□ 0.46
LDB3O75112 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.93■□□□□ 0.46
LDB3O75112 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms