Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNX3O60493 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNX3O60493 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNX3O60493 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.81■□□□□ 0.6
SNX3O60493 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
SNX3O60493 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNX3O60493 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.81■□□□□ 0.6
SNX3O60493 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
SNX3O60493 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.81■□□□□ 0.6
SNX3O60493 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNX3O60493 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.81■□□□□ 0.6
SNX3O60493 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNX3O60493 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SNX3O60493 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
SNX3O60493 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.8■□□□□ 0.6
SNX3O60493 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC18.8■□□□□ 0.6
SNX3O60493 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.8■□□□□ 0.6
SNX3O60493 AL136967.2-201ENST00000623968 743 ntBASIC18.8■□□□□ 0.6
SNX3O60493 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.8■□□□□ 0.6
SNX3O60493 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.8■□□□□ 0.6
SNX3O60493 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SNX3O60493 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SNX3O60493 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 AIRN-201ENST00000601203 4374 ntBASIC18.79■□□□□ 0.6
SNX3O60493 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SNX3O60493 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SNX3O60493 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.79■□□□□ 0.6
SNX3O60493 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.79■□□□□ 0.6
SNX3O60493 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.79■□□□□ 0.6
SNX3O60493 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.79■□□□□ 0.6
SNX3O60493 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
SNX3O60493 AL162412.1-201ENST00000567129 965 ntBASIC18.79■□□□□ 0.6
SNX3O60493 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 AC100791.3-201ENST00000617619 330 ntBASIC18.79■□□□□ 0.6
SNX3O60493 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 TFP1-202ENST00000475455 1573 ntBASIC18.79■□□□□ 0.6
SNX3O60493 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SNX3O60493 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SNX3O60493 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SNX3O60493 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.78■□□□□ 0.6
SNX3O60493 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SNX3O60493 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.78■□□□□ 0.6
SNX3O60493 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 LINC02228-203ENST00000641970 1355 ntBASIC18.78■□□□□ 0.6
SNX3O60493 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.78■□□□□ 0.6
SNX3O60493 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNX3O60493 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SNX3O60493 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.77■□□□□ 0.6
SNX3O60493 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SNX3O60493 AC124067.4-201ENST00000519691 2379 ntBASIC18.77■□□□□ 0.6
SNX3O60493 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SNX3O60493 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms