Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MSH4O15457 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MSH4O15457 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MSH4O15457 SLC25A3P1-201ENST00000443844 931 ntBASIC21.44■■□□□ 1.02
MSH4O15457 TSPY17P-201ENST00000450329 467 ntBASIC21.44■■□□□ 1.02
MSH4O15457 AC128688.1-201ENST00000487626 519 ntBASIC21.44■■□□□ 1.02
MSH4O15457 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.44■■□□□ 1.02
MSH4O15457 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH4O15457 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
MSH4O15457 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
MSH4O15457 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH4O15457 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
MSH4O15457 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH4O15457 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 FP475955.4-201ENST00000623131 1990 ntBASIC21.43■■□□□ 1.02
MSH4O15457 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
MSH4O15457 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH4O15457 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH4O15457 AC008622.2-201ENST00000617006 1229 ntBASIC21.43■■□□□ 1.02
MSH4O15457 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH4O15457 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH4O15457 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH4O15457 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH4O15457 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH4O15457 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
MSH4O15457 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH4O15457 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
MSH4O15457 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
MSH4O15457 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
MSH4O15457 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.42■■□□□ 1.02
MSH4O15457 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.42■■□□□ 1.02
MSH4O15457 AP003041.3-201ENST00000527151 707 ntBASIC21.42■■□□□ 1.02
MSH4O15457 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH4O15457 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
MSH4O15457 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH4O15457 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.42■■□□□ 1.02
MSH4O15457 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH4O15457 AC005363.2-201ENST00000618631 242 ntBASIC21.42■■□□□ 1.02
MSH4O15457 AC010653.2-201ENST00000623505 997 ntBASIC21.42■■□□□ 1.02
MSH4O15457 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
MSH4O15457 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
MSH4O15457 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.42■■□□□ 1.02
MSH4O15457 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.42■■□□□ 1.02
MSH4O15457 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
MSH4O15457 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH4O15457 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH4O15457 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.41■■□□□ 1.02
MSH4O15457 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
MSH4O15457 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH4O15457 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH4O15457 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH4O15457 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.41■■□□□ 1.02
MSH4O15457 RCN1P1-201ENST00000400413 996 ntBASIC21.41■■□□□ 1.02
MSH4O15457 AC113347.1-201ENST00000413321 391 ntBASIC21.41■■□□□ 1.02
MSH4O15457 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH4O15457 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH4O15457 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH4O15457 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
MSH4O15457 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH4O15457 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH4O15457 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH4O15457 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH4O15457 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
MSH4O15457 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.4■■□□□ 1.02
MSH4O15457 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
MSH4O15457 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH4O15457 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.4■■□□□ 1.02
MSH4O15457 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms