Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.4■□□□□ 0.54
CDX4O14627 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CDX4O14627 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.4■□□□□ 0.54
CDX4O14627 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.4■□□□□ 0.54
CDX4O14627 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.4■□□□□ 0.54
CDX4O14627 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CDX4O14627 AC112497.1-201ENST00000624824 639 ntBASIC18.4■□□□□ 0.54
CDX4O14627 AF228730.7-201ENST00000641842 219 ntBASIC18.4■□□□□ 0.54
CDX4O14627 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CDX4O14627 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.4■□□□□ 0.54
CDX4O14627 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CDX4O14627 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDX4O14627 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.39■□□□□ 0.54
CDX4O14627 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDX4O14627 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CDX4O14627 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CDX4O14627 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDX4O14627 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
CDX4O14627 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 Z83836.1-201ENST00000624605 1642 ntBASIC18.39■□□□□ 0.53
CDX4O14627 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 MIR574-201ENST00000385209 96 ntBASIC18.39■□□□□ 0.53
CDX4O14627 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.39■□□□□ 0.53
CDX4O14627 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.39■□□□□ 0.53
CDX4O14627 AC074051.2-201ENST00000565115 352 ntBASIC18.39■□□□□ 0.53
CDX4O14627 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.39■□□□□ 0.53
CDX4O14627 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.39■□□□□ 0.53
CDX4O14627 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CDX4O14627 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CDX4O14627 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 AL691432.2-201ENST00000607222 2038 ntBASIC18.39■□□□□ 0.53
CDX4O14627 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDX4O14627 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.38■□□□□ 0.53
CDX4O14627 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDX4O14627 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.38■□□□□ 0.53
CDX4O14627 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX4O14627 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX4O14627 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CDX4O14627 KRT18P13-201ENST00000400056 1290 ntBASIC18.38■□□□□ 0.53
CDX4O14627 PMS2P1-201ENST00000431037 1228 ntBASIC18.38■□□□□ 0.53
CDX4O14627 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.38■□□□□ 0.53
CDX4O14627 MCCD1P1-208ENST00000445732 328 ntBASIC18.38■□□□□ 0.53
CDX4O14627 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.38■□□□□ 0.53
CDX4O14627 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX4O14627 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.38■□□□□ 0.53
CDX4O14627 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX4O14627 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX4O14627 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CDX4O14627 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX4O14627 AC090616.6-201ENST00000582640 721 ntBASIC18.38■□□□□ 0.53
CDX4O14627 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDX4O14627 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.38■□□□□ 0.53
CDX4O14627 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.38■□□□□ 0.53
CDX4O14627 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX4O14627 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.37■□□□□ 0.53
CDX4O14627 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.37■□□□□ 0.53
CDX4O14627 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.37■□□□□ 0.53
CDX4O14627 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX4O14627 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX4O14627 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX4O14627 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX4O14627 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDX4O14627 AKR1C7P-201ENST00000305623 895 ntBASIC18.37■□□□□ 0.53
CDX4O14627 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX4O14627 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.37■□□□□ 0.53
CDX4O14627 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CDX4O14627 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CDX4O14627 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CDX4O14627 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDX4O14627 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.37■□□□□ 0.53
CDX4O14627 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms