Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
TRIM38O00635 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM38O00635 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.18■□□□□ 0.66
TRIM38O00635 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM38O00635 AC018553.1-201ENST00000616682 1458 ntBASIC19.18■□□□□ 0.66
TRIM38O00635 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.18■□□□□ 0.66
TRIM38O00635 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
TRIM38O00635 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM38O00635 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM38O00635 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM38O00635 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TRIM38O00635 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM38O00635 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 BX119927.1-201ENST00000636596 1552 ntBASIC19.18■□□□□ 0.66
TRIM38O00635 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM38O00635 Z82202.1-201ENST00000623446 1880 ntBASIC19.18■□□□□ 0.66
TRIM38O00635 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRIM38O00635 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 YBX1P10-201ENST00000444752 975 ntBASIC19.17■□□□□ 0.66
TRIM38O00635 AC104076.2-201ENST00000448912 469 ntBASIC19.17■□□□□ 0.66
TRIM38O00635 B3GAT3P1-201ENST00000471720 806 ntBASIC19.17■□□□□ 0.66
TRIM38O00635 KRT18P16-201ENST00000510337 1294 ntBASIC19.17■□□□□ 0.66
TRIM38O00635 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 AC010203.1-204ENST00000548782 407 ntBASIC19.17■□□□□ 0.66
TRIM38O00635 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.17■□□□□ 0.66
TRIM38O00635 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
TRIM38O00635 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.17■□□□□ 0.66
TRIM38O00635 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRIM38O00635 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM38O00635 KRT16P6-202ENST00000425692 1426 ntBASIC19.17■□□□□ 0.66
TRIM38O00635 AC093503.3-201ENST00000624917 2352 ntBASIC19.17■□□□□ 0.66
TRIM38O00635 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM38O00635 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM38O00635 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM38O00635 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM38O00635 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM38O00635 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM38O00635 AC004980.1-204ENST00000429707 299 ntBASIC19.16■□□□□ 0.66
TRIM38O00635 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM38O00635 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM38O00635 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM38O00635 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
TRIM38O00635 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM38O00635 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM38O00635 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM38O00635 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM38O00635 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM38O00635 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM38O00635 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
TRIM38O00635 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM38O00635 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms