Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRC53A6NM62 C1QL1P1-201ENST00000568105 661 ntBASIC20.57■□□□□ 0.88
LRRC53A6NM62 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.57■□□□□ 0.88
LRRC53A6NM62 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.57■□□□□ 0.88
LRRC53A6NM62 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
LRRC53A6NM62 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRC53A6NM62 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
LRRC53A6NM62 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LRRC53A6NM62 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LRRC53A6NM62 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC53A6NM62 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRC53A6NM62 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 AL355802.2-201ENST00000402069 882 ntBASIC20.56■□□□□ 0.88
LRRC53A6NM62 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC53A6NM62 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LRRC53A6NM62 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 AL160286.2-201ENST00000567150 934 ntBASIC20.55■□□□□ 0.88
LRRC53A6NM62 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 AC083906.6-201ENST00000641366 219 ntBASIC20.55■□□□□ 0.88
LRRC53A6NM62 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 ANO7L1-203ENST00000602586 1720 ntBASIC20.55■□□□□ 0.88
LRRC53A6NM62 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.55■□□□□ 0.88
LRRC53A6NM62 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRRC53A6NM62 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LRRC53A6NM62 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC53A6NM62 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC53A6NM62 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC53A6NM62 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
LRRC53A6NM62 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC53A6NM62 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRRC53A6NM62 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms