Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 HSFY6P-201ENST00000445573 403 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 RN7SL98P-201ENST00000462271 300 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AC010618.1-201ENST00000469924 477 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 RPS23P3-201ENST00000470993 430 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AC068446.3-201ENST00000555285 382 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AC091178.1-203ENST00000584586 279 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AC032011.1-201ENST00000611703 1549 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 MTND5P7-201ENST00000413558 1798 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 AC233263.6-201ENST00000631132 1963 ntBASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CHMP3Q9Y3E7 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 MTND5P27-201ENST00000428871 1720 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.26-201ENST00000362539 101 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 RNY3P11-201ENST00000364153 102 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 SNORD73A-201ENST00000386062 65 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 AC097374.1-203ENST00000400783 485 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 MIR1252-201ENST00000408861 65 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 RNU4-78P-201ENST00000410940 126 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 RPS20P14-201ENST00000412545 360 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 BX276092.3-201ENST00000424182 230 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 AL353997.1-201ENST00000432936 108 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 AC011816.1-201ENST00000441346 546 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 AP000942.1-201ENST00000463969 747 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 RN7SL303P-201ENST00000469773 251 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 RN7SKP46-201ENST00000515942 234 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 RN7SKP82-201ENST00000516786 223 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-677P-201ENST00000516914 101 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.715-201ENST00000517082 110 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 SUB1P3-201ENST00000564581 315 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 MIR3138-201ENST00000585238 82 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 AC104763.2-201ENST00000604179 382 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 MIR4272-201ENST00000635924 64 ntBASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.55□□□□□ -1.52
CHMP3Q9Y3E7 MAPK10-349ENST00000641767 3661 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 MIR331-201ENST00000362302 94 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.48-201ENST00000362710 103 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.152-201ENST00000363578 100 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-146P-201ENST00000384602 108 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 RNA5SP56-201ENST00000410277 118 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 SYF2P2-201ENST00000417620 583 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 Z74021.1-201ENST00000423610 407 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AL645568.3-201ENST00000433683 316 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 PPIAP21-201ENST00000464473 501 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AC108860.1-201ENST00000484521 383 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 DEFB109F-201ENST00000491870 277 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AC018437.1-201ENST00000492214 406 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 RNA5SP497-201ENST00000516081 97 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 RNA5SP464-201ENST00000516251 108 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 ERHP1-201ENST00000523006 310 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AP000889.1-201ENST00000530968 660 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 IPO5P1-202ENST00000600039 287 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 BPIFA4P-203ENST00000603168 689 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 Z98751.3-201ENST00000604447 521 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 MIR6130-201ENST00000619419 109 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AC015967.1-201ENST00000619893 476 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AL596275.2-204ENST00000641628 552 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AL596275.2-206ENST00000641957 626 ntBASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP3Q9Y3E7 MAPK10-286ENST00000641208 8747 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms