Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS9D1Q9Y2B5 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AP000756.2-201ENST00000624168 2567 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 Y_RNA.101-201ENST00000363154 102 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 MIR626-201ENST00000385032 94 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 MIR34A-201ENST00000385130 110 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6ATAC19P-201ENST00000408096 110 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 RN7SKP122-201ENST00000515923 296 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 RN7SKP238-201ENST00000516483 249 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 MIR4310-201ENST00000582950 57 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 MIR6809-201ENST00000612189 116 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AL353748.2-201ENST00000622148 471 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.8□□□□□ -1.48
VPS9D1Q9Y2B5 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 Y_RNA.251-201ENST00000364551 99 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 Y_RNA.294-201ENST00000364916 102 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-643P-201ENST00000384018 107 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-588P-201ENST00000410281 105 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AL121914.1-201ENST00000450188 156 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 RPS4XP1-201ENST00000482189 787 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 GLUD1P3-202ENST00000508551 200 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-155P-201ENST00000516347 100 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 RNU2-60P-201ENST00000517290 128 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 UTP23-205ENST00000520733 369 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AL357075.2-201ENST00000614906 189 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AC087516.1-201ENST00000561236 2428 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 AP004607.3-201ENST00000530354 3915 ntBASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
VPS9D1Q9Y2B5 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 AL359955.1-201ENST00000455242 3275 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-1167P-201ENST00000363227 94 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 SNORA8.3-201ENST00000384679 139 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 Y_RNA.558-201ENST00000384685 113 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 MIR548A3-201ENST00000385297 97 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 GSTM5P1-201ENST00000434751 660 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms