Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
DDX41Q9UJV9 RPS4XP5-202ENST00000449995 1334 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 NOL8P1-201ENST00000508336 3529 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 Y_RNA.184-201ENST00000363884 108 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 RNU6-14P-201ENST00000384630 106 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 RPL23AP48-201ENST00000406913 488 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 RPS12P24-201ENST00000412619 387 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AC236972.2-201ENST00000434979 310 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 HMGN2P21-201ENST00000447764 270 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 S100A11P1-201ENST00000477525 312 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AP001086.1-201ENST00000494882 321 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 HMGB1P22-201ENST00000505315 124 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 PARP4P3-201ENST00000510265 317 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AL359273.1-201ENST00000510918 627 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 RNA5SP497-201ENST00000516081 97 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 RNU6-927P-201ENST00000516199 100 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 RNU6-277P-201ENST00000516272 106 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 MRPL49P2-201ENST00000521066 465 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 MIR1254-2-201ENST00000579553 63 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 MIR3941-201ENST00000582572 103 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AC002545.1-201ENST00000592511 181 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 BNIP3P25-201ENST00000596023 559 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AP002826.1-201ENST00000608835 315 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 uc_338.15-201ENST00000615470 191 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 AC103705.1-201ENST00000619013 241 ntBASIC4.98□□□□□ -1.61
DDX41Q9UJV9 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
DDX41Q9UJV9 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 Y_RNA.67-201ENST00000362870 100 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 SNORA7.2-201ENST00000364446 145 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 RNA5SP151-201ENST00000365632 117 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 Y_RNA.399-201ENST00000383955 105 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 RNA5SP219-201ENST00000390940 113 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AL356057.2-201ENST00000403318 432 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC092809.3-201ENST00000415453 231 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AL356867.1-201ENST00000429623 299 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AL049874.1-201ENST00000489560 388 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC104136.1-201ENST00000512969 394 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 Vault.1-201ENST00000516474 102 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC022968.1-201ENST00000567372 442 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC113139.1-201ENST00000605049 239 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 CTHRC1P1-201ENST00000605383 469 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC023043.4-201ENST00000612081 449 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC007742.2-201ENST00000618226 398 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AP003400.5-201ENST00000624827 617 ntBASIC4.97□□□□□ -1.61
DDX41Q9UJV9 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.97□□□□□ -1.61
DDX41Q9UJV9 AC018555.1-201ENST00000567548 1980 ntBASIC4.96□□□□□ -1.61
DDX41Q9UJV9 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.96□□□□□ -1.62
DDX41Q9UJV9 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
DDX41Q9UJV9 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
DDX41Q9UJV9 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
DDX41Q9UJV9 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
DDX41Q9UJV9 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
DDX41Q9UJV9 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
DDX41Q9UJV9 Y_RNA.58-201ENST00000362807 102 ntBASIC4.96□□□□□ -1.62
DDX41Q9UJV9 Y_RNA.154-201ENST00000363624 102 ntBASIC4.96□□□□□ -1.62
DDX41Q9UJV9 RNY3P1-201ENST00000365085 102 ntBASIC4.96□□□□□ -1.62
DDX41Q9UJV9 RNA5SP22-201ENST00000365393 109 ntBASIC4.96□□□□□ -1.62
DDX41Q9UJV9 RNY3-201ENST00000365484 102 ntBASIC4.96□□□□□ -1.62
DDX41Q9UJV9 Y_RNA.387-201ENST00000383918 102 ntBASIC4.96□□□□□ -1.62
DDX41Q9UJV9 Y_RNA.490-201ENST00000384413 102 ntBASIC4.96□□□□□ -1.62
DDX41Q9UJV9 AL139039.1-201ENST00000401900 692 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 160.7 ms