Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SNORA40C-201ENST00000391285 128 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 RPS15AP5-201ENST00000436276 388 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC5.85□□□□□ -1.47
COL9A1P20849 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC5.85□□□□□ -1.47
COL9A1P20849 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC5.85□□□□□ -1.47
COL9A1P20849 MIR6830-201ENST00000636015 70 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
COL9A1P20849 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL9A1P20849 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.85□□□□□ -1.47
COL9A1P20849 AC114774.1-201ENST00000507410 1770 ntBASIC5.85□□□□□ -1.47
COL9A1P20849 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL9A1P20849 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.85□□□□□ -1.47
COL9A1P20849 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL9A1P20849 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL9A1P20849 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC5.84□□□□□ -1.47
COL9A1P20849 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL9A1P20849 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL9A1P20849 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL9A1P20849 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.84□□□□□ -1.47
COL9A1P20849 RNU6-78P-201ENST00000362897 107 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 SNORD8-201ENST00000363915 110 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 HLFP1-201ENST00000402375 499 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.84□□□□□ -1.47
COL9A1P20849 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC5.84□□□□□ -1.47
COL9A1P20849 AL162739.1-201ENST00000450606 307 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 PPIAP21-201ENST00000464473 501 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.84□□□□□ -1.47
COL9A1P20849 RN7SKP122-201ENST00000515923 296 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 Y_RNA.694-201ENST00000516677 117 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 AC021678.3-201ENST00000517893 476 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
COL9A1P20849 AC100767.1-201ENST00000528178 123 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC5.84□□□□□ -1.47
COL9A1P20849 AP006289.1-201ENST00000538089 277 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 AC092490.3-201ENST00000545370 572 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.84□□□□□ -1.47
COL9A1P20849 MIR4260-201ENST00000583107 67 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 AL138963.2-201ENST00000605137 226 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 AC048347.1-201ENST00000624621 427 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 MIR3658-201ENST00000636291 56 ntBASIC5.84□□□□□ -1.47
COL9A1P20849 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
COL9A1P20849 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.84□□□□□ -1.47
COL9A1P20849 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL9A1P20849 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL9A1P20849 AL033543.1-201ENST00000623440 13454 ntBASIC5.84□□□□□ -1.48
COL9A1P20849 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.84□□□□□ -1.48
COL9A1P20849 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.83□□□□□ -1.48
COL9A1P20849 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL9A1P20849 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
COL9A1P20849 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 RNA5SP387-201ENST00000364226 106 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 RNU1-64P-201ENST00000365443 163 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 AC007568.1-201ENST00000422912 471 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 AC073264.2-201ENST00000448886 166 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 snoU13.3-201ENST00000459441 104 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 AC023424.1-201ENST00000496058 459 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 BTF3L4P4-201ENST00000506381 449 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 RN7SKP67-201ENST00000515905 235 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 RN7SKP288-201ENST00000516227 268 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC5.83□□□□□ -1.48
COL9A1P20849 MRPS21P7-201ENST00000566937 238 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 AC069307.1-201ENST00000602820 447 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 AL591926.4-201ENST00000616895 298 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 AC027309.3-201ENST00000623419 351 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL9A1P20849 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC5.83□□□□□ -1.48
COL9A1P20849 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC5.83□□□□□ -1.48
COL9A1P20849 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC5.83□□□□□ -1.48
COL9A1P20849 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC5.83□□□□□ -1.48
COL9A1P20849 AL355834.1-201ENST00000556602 3965 ntBASIC5.83□□□□□ -1.48
COL9A1P20849 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL9A1P20849 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC5.83□□□□□ -1.48
COL9A1P20849 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL9A1P20849 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL9A1P20849 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
COL9A1P20849 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL9A1P20849 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC5.82□□□□□ -1.48
COL9A1P20849 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
COL9A1P20849 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL9A1P20849 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
COL9A1P20849 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL9A1P20849 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL9A1P20849 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL9A1P20849 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.82□□□□□ -1.48
COL9A1P20849 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.82□□□□□ -1.48
COL9A1P20849 RNU6-105P-201ENST00000363909 104 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 RNA5SP131-201ENST00000365452 119 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 RNU6-147P-201ENST00000383983 107 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 RNA5SP44-201ENST00000410446 133 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 FTLP19-201ENST00000433300 394 ntBASIC5.82□□□□□ -1.48
COL9A1P20849 RNA5SP76-201ENST00000516277 87 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms