Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNU6-1155P-201ENST00000363554 107 ntBASIC8.87□□□□□ -0.99
MSH5O43196 AL645939.3-201ENST00000435408 225 ntBASIC8.87□□□□□ -0.99
MSH5O43196 IGKV2D-36-201ENST00000518643 226 ntBASIC8.87□□□□□ -0.99
MSH5O43196 IGLVV-66-201ENST00000523818 341 ntBASIC8.87□□□□□ -0.99
MSH5O43196 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
MSH5O43196 MIR4694-201ENST00000578534 80 ntBASIC8.87□□□□□ -0.99
MSH5O43196 AC011471.1-201ENST00000585766 187 ntBASIC8.87□□□□□ -0.99
MSH5O43196 AL451007.1-201ENST00000595491 289 ntBASIC8.87□□□□□ -0.99
MSH5O43196 uc_338.31-201ENST00000615595 186 ntBASIC8.87□□□□□ -0.99
MSH5O43196 Y_RNA.788-201ENST00000622394 112 ntBASIC8.87□□□□□ -0.99
MSH5O43196 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
MSH5O43196 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC8.87□□□□□ -0.99
MSH5O43196 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
MSH5O43196 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
MSH5O43196 AC116096.1-201ENST00000566804 2314 ntBASIC8.87□□□□□ -0.99
MSH5O43196 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
MSH5O43196 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
MSH5O43196 AC027575.3-201ENST00000583058 2747 ntBASIC8.87□□□□□ -0.99
MSH5O43196 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
MSH5O43196 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
MSH5O43196 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC8.86□□□□□ -0.99
MSH5O43196 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
MSH5O43196 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC8.86□□□□□ -0.99
MSH5O43196 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
MSH5O43196 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC8.86□□□□□ -0.99
MSH5O43196 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
MSH5O43196 SNORD113.2-201ENST00000364166 89 ntBASIC8.86□□□□□ -0.99
MSH5O43196 MIR577-201ENST00000385196 96 ntBASIC8.86□□□□□ -0.99
MSH5O43196 RNU6-821P-201ENST00000390995 107 ntBASIC8.86□□□□□ -0.99
MSH5O43196 RPL36AP10-201ENST00000421785 322 ntBASIC8.86□□□□□ -0.99
MSH5O43196 GAPDHP59-201ENST00000435908 267 ntBASIC8.86□□□□□ -0.99
MSH5O43196 ANP32BP2-201ENST00000454525 545 ntBASIC8.86□□□□□ -0.99
MSH5O43196 RN7SL216P-201ENST00000471607 298 ntBASIC8.86□□□□□ -0.99
MSH5O43196 RPL10P18-201ENST00000519384 309 ntBASIC8.86□□□□□ -0.99
MSH5O43196 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC8.86□□□□□ -0.99
MSH5O43196 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC8.86□□□□□ -0.99
MSH5O43196 AC005519.1-201ENST00000554490 601 ntBASIC8.86□□□□□ -0.99
MSH5O43196 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC8.86□□□□□ -0.99
MSH5O43196 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC8.85□□□□□ -0.99
MSH5O43196 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.99
MSH5O43196 FTO-215ENST00000636491 1676 ntTSL 5 BASIC8.85□□□□□ -0.99
MSH5O43196 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC8.85□□□□□ -0.99
MSH5O43196 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC8.85□□□□□ -0.99
MSH5O43196 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC8.85□□□□□ -0.99
MSH5O43196 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 U3.7-201ENST00000363668 216 ntBASIC8.85□□□□□ -0.99
MSH5O43196 RNU6-674P-201ENST00000363831 107 ntBASIC8.85□□□□□ -0.99
MSH5O43196 RNA5SP485-201ENST00000365053 119 ntBASIC8.85□□□□□ -0.99
MSH5O43196 RN7SKP267-201ENST00000410381 285 ntBASIC8.85□□□□□ -0.99
MSH5O43196 RPL35AP3-201ENST00000414680 288 ntBASIC8.85□□□□□ -0.99
MSH5O43196 AC012306.1-201ENST00000423267 114 ntBASIC8.85□□□□□ -0.99
MSH5O43196 UQCRHP1-204ENST00000424609 274 ntBASIC8.85□□□□□ -0.99
MSH5O43196 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC8.85□□□□□ -0.99
MSH5O43196 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC8.85□□□□□ -0.99
MSH5O43196 RPS29P2-201ENST00000479278 136 ntBASIC8.85□□□□□ -0.99
MSH5O43196 MIR3163-201ENST00000581592 73 ntBASIC8.85□□□□□ -0.99
MSH5O43196 AL591034.3-201ENST00000605511 685 ntBASIC8.85□□□□□ -0.99
MSH5O43196 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC8.85□□□□□ -0.99
MSH5O43196 CA10-204ENST00000570565 2276 ntTSL 5 BASIC8.85□□□□□ -0.99
MSH5O43196 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 IARS-205ENST00000443024 4341 ntTSL 5 BASIC8.85□□□□□ -0.99
MSH5O43196 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
MSH5O43196 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 AC004158.1-201ENST00000564508 4319 ntBASIC8.84□□□□□ -0.99
MSH5O43196 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 AC092681.1-201ENST00000297369 291 ntBASIC8.84□□□□□ -0.99
MSH5O43196 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC8.84□□□□□ -0.99
MSH5O43196 RNA5SP140-201ENST00000364524 92 ntBASIC8.84□□□□□ -0.99
MSH5O43196 SNORD87-201ENST00000364849 89 ntBASIC8.84□□□□□ -0.99
MSH5O43196 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
MSH5O43196 SNORA36C-201ENST00000384289 132 ntBASIC8.84□□□□□ -0.99
MSH5O43196 SNORA18-201ENST00000384416 132 ntBASIC8.84□□□□□ -0.99
MSH5O43196 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 RPL31P2-201ENST00000413849 377 ntBASIC8.84□□□□□ -0.99
MSH5O43196 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC8.84□□□□□ -0.99
MSH5O43196 AL355433.1-201ENST00000422804 300 ntBASIC8.84□□□□□ -0.99
MSH5O43196 MRPS21P3-201ENST00000436696 262 ntBASIC8.84□□□□□ -0.99
MSH5O43196 RN7SL362P-201ENST00000494228 267 ntBASIC8.84□□□□□ -0.99
MSH5O43196 SCARNA21.2-201ENST00000516600 166 ntBASIC8.84□□□□□ -0.99
MSH5O43196 IGHV4-55-201ENST00000520889 368 ntBASIC8.84□□□□□ -0.99
MSH5O43196 AC007537.1-201ENST00000539347 327 ntBASIC8.84□□□□□ -0.99
MSH5O43196 APOC2-205ENST00000592257 444 ntTSL 3 BASIC8.84□□□□□ -0.99
MSH5O43196 AP005212.3-201ENST00000619964 528 ntBASIC8.84□□□□□ -0.99
MSH5O43196 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
MSH5O43196 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 139.4 ms