Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RN7SL447P-201ENST00000494711 245 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AC006427.1-201ENST00000514359 712 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-914P-201ENST00000516749 109 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 HMGB1P40-201ENST00000525121 540 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 HIGD1AP5-201ENST00000529959 259 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AL359219.2-201ENST00000555184 348 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AL161713.1-201ENST00000555538 145 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 CPDP1-201ENST00000579660 283 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 BDH2P1-201ENST00000602288 736 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AC008814.1-201ENST00000603797 406 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AL121917.1-203ENST00000605534 577 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AC127024.6-201ENST00000621598 424 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AC073869.10-201ENST00000642016 354 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 RLIMP1-201ENST00000339626 1680 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AC093535.2-201ENST00000624769 2326 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AP000560.1-201ENST00000624150 1937 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AC005183.1-201ENST00000603687 1979 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 ADAM5-202ENST00000399789 1942 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 Y_RNA.83-201ENST00000363005 113 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 RNU4-44P-201ENST00000363050 141 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-76P-201ENST00000384060 104 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 MIR578-201ENST00000384828 96 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 Y_RNA.592-201ENST00000410274 109 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AL159987.2-201ENST00000432754 307 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 TMSB4XP3-201ENST00000445144 114 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AL360271.2-201ENST00000447710 161 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 RN7SL515P-201ENST00000463999 297 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AC100832.1-201ENST00000471945 383 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AC107393.1-201ENST00000512403 346 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 SNORA31.6-201ENST00000516241 130 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 SCARNA24.2-201ENST00000516968 130 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 SNORA31.22-201ENST00000517204 135 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 IGKV3D-34-201ENST00000522638 302 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AC008489.1-201ENST00000524271 483 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 SNRPGP16-201ENST00000533275 226 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AC006349.1-201ENST00000555526 235 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 BX284668.6-201ENST00000606899 438 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 RN7SL787P-201ENST00000613000 284 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 MIR8080-201ENST00000622224 89 ntBASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HIF3AQ9Y2N7 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 ZNF285B-201ENST00000561698 1767 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-378P-201ENST00000384324 107 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 RNA5SP339-201ENST00000390987 122 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-882P-201ENST00000391025 103 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AL161636.2-201ENST00000445179 927 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AC108161.1-201ENST00000461060 402 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 RN7SL466P-201ENST00000497546 295 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 GMPSP1-201ENST00000514075 579 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-1338P-201ENST00000516328 91 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 SNORA25.14-201ENST00000516481 132 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-1212P-201ENST00000517023 104 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AC024405.2-202ENST00000532731 184 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AC022404.1-201ENST00000555320 273 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 BNIP3P5-201ENST00000562290 498 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AC005951.2-201ENST00000576282 495 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 MIR4458-201ENST00000578872 75 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms