Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC099654.14-201ENST00000638599 341 ntBASIC3.81□□□□□ -1.8
VPS4AQ9UN37 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS4AQ9UN37 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 ZNF680P1-201ENST00000436625 1469 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 MIR1-2-201ENST00000384961 85 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 RNU4-6P-201ENST00000410804 122 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 RNA5SP107-201ENST00000411358 122 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC093578.1-201ENST00000415219 368 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 USP9YP27-201ENST00000418455 438 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 ELOCP14-201ENST00000428070 331 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 MED13P1-201ENST00000428342 171 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 KCTD9P3-201ENST00000434597 1169 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 HMGB1P31-201ENST00000437242 427 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 ELOCP7-201ENST00000439968 331 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 NFU1P2-201ENST00000448700 469 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC006480.1-201ENST00000449887 378 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC027673.1-201ENST00000456245 405 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AL136097.1-201ENST00000456945 913 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC069439.1-201ENST00000494739 167 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 FCF1P3-201ENST00000496394 590 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 HMGB1P22-201ENST00000505315 124 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC110768.1-201ENST00000509222 400 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 NDUFB4P9-201ENST00000511646 388 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC074344.1-201ENST00000512823 224 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 RNU2-10P-201ENST00000516375 211 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 SNORA74D-201ENST00000516404 141 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC128657.1-201ENST00000549459 145 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC098848.2-201ENST00000588023 330 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 MIR486-1-201ENST00000612171 68 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 TUG1_2.1-201ENST00000614234 87 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AL354798.1-201ENST00000622505 329 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AC243312.2-201ENST00000623340 601 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AL365440.1-201ENST00000436135 2167 ntBASIC3.8□□□□□ -1.8
VPS4AQ9UN37 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS4AQ9UN37 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 RNU6-1284P-201ENST00000363701 100 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 RNU5E-6P-201ENST00000365574 115 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 SNORA9-201ENST00000384215 133 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 RNU6-606P-201ENST00000384721 111 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 Y_RNA.573-201ENST00000384763 105 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 MIR34B-201ENST00000385076 84 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 RNU2-43P-201ENST00000410306 190 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 RAB9AP3-201ENST00000412737 573 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 PPP1R11P2-201ENST00000423543 382 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AL691449.1-201ENST00000426570 421 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 RPS20P5-201ENST00000434808 360 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 GAPDHP27-201ENST00000447427 1020 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AL162389.1-201ENST00000449233 177 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 RAB9AP1-201ENST00000449393 573 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AC140076.1-201ENST00000449897 361 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AL356010.1-201ENST00000456364 102 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AC026427.2-201ENST00000506228 536 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 SNORA40.12-201ENST00000516329 111 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 ARL2BPP2-201ENST00000550907 489 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AC008752.3-201ENST00000588113 712 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AC096577.2-201ENST00000611455 153 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AC004696.1-201ENST00000614345 607 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 AL450472.3-201ENST00000615578 367 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 MIR7151-201ENST00000617477 60 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 FER-210ENST00000628534 558 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 UBE3AP2-201ENST00000429033 2259 ntBASIC3.79□□□□□ -1.8
VPS4AQ9UN37 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS4AQ9UN37 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 257.9 ms