Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AL139396.1-201ENST00000421137 167 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 AC079780.1-201ENST00000428259 207 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 RPL23AP89-201ENST00000439324 255 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 MTND4P19-201ENST00000446659 478 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 Y_RNA.639-201ENST00000458981 102 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 RNU7-152P-201ENST00000458982 64 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 SNORD108-201ENST00000459332 71 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.49□□□□□ -1.69
USP53Q70EK8 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
USP53Q70EK8 RPL21P129-201ENST00000491732 478 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 AP002812.1-201ENST00000495378 474 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 MTND5P5-201ENST00000503764 376 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 HMGB3P15-201ENST00000507326 574 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 AC007016.1-201ENST00000512110 244 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 RPL39P5-202ENST00000512505 151 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 AC015795.1-201ENST00000513669 327 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 AP004371.1-201ENST00000525240 214 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 AP005639.2-201ENST00000527592 928 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.49□□□□□ -1.69
USP53Q70EK8 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.49□□□□□ -1.69
USP53Q70EK8 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.49□□□□□ -1.69
USP53Q70EK8 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.49□□□□□ -1.69
USP53Q70EK8 MIR4790-201ENST00000577799 79 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 VN1R85P-201ENST00000601587 426 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.49□□□□□ -1.69
USP53Q70EK8 MIR8069-1-201ENST00000616627 86 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 AP005019.3-201ENST00000620418 560 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 MIR8069-2-201ENST00000621412 86 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.49□□□□□ -1.69
USP53Q70EK8 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP53Q70EK8 RAD17P1-201ENST00000418130 2042 ntBASIC4.49□□□□□ -1.69
USP53Q70EK8 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.49□□□□□ -1.69
USP53Q70EK8 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
USP53Q70EK8 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.49□□□□□ -1.69
USP53Q70EK8 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.49□□□□□ -1.69
USP53Q70EK8 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.49□□□□□ -1.69
USP53Q70EK8 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
USP53Q70EK8 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.48□□□□□ -1.69
USP53Q70EK8 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP53Q70EK8 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
USP53Q70EK8 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
USP53Q70EK8 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP53Q70EK8 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP53Q70EK8 Y_RNA.135-201ENST00000363439 95 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 RNA5SP515-201ENST00000364570 118 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 RNA5SP509-201ENST00000364577 119 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AC097374.1-203ENST00000400783 485 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AL445189.1-201ENST00000405722 338 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AC080125.1-201ENST00000414888 684 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 RPLP0P7-201ENST00000416050 667 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.48□□□□□ -1.69
USP53Q70EK8 FABP5P14-201ENST00000437273 393 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.48□□□□□ -1.69
USP53Q70EK8 BRK1P2-201ENST00000442875 223 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AC073587.1-201ENST00000447093 876 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 MTND1P17-201ENST00000448961 204 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 RPL21P126-201ENST00000470049 478 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.48□□□□□ -1.69
USP53Q70EK8 RPL36AP41-201ENST00000493820 306 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP53Q70EK8 VN1R104P-201ENST00000505115 1009 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 SNORA14.1-201ENST00000516113 141 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 MIR2116-201ENST00000517221 80 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 TRMT10BP1-201ENST00000519377 943 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 RANP9-201ENST00000519957 271 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.48□□□□□ -1.69
USP53Q70EK8 DYNLL1P4-201ENST00000549314 266 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.48□□□□□ -1.69
USP53Q70EK8 AL163153.1-201ENST00000554223 283 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.48□□□□□ -1.69
USP53Q70EK8 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.48□□□□□ -1.69
USP53Q70EK8 MIR3941-201ENST00000582572 103 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 ATP1B3P1-201ENST00000605365 821 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AL627309.6-201ENST00000606857 840 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 AC022893.3-201ENST00000607665 437 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.48□□□□□ -1.69
USP53Q70EK8 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USP53Q70EK8 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP53Q70EK8 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
USP53Q70EK8 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.48□□□□□ -1.69
USP53Q70EK8 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
USP53Q70EK8 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.48□□□□□ -1.69
USP53Q70EK8 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.47□□□□□ -1.69
USP53Q70EK8 AC021146.4-201ENST00000309229 279 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 Y_RNA.128-201ENST00000363391 112 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 RN7SKP44-201ENST00000363602 316 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 RNU6-288P-201ENST00000363690 104 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 RNA5SP235-201ENST00000365411 114 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 SNORD116-11-201ENST00000383882 92 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
USP53Q70EK8 AL360182.1-201ENST00000397433 468 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 AL139039.1-201ENST00000401900 692 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 MIR548P-201ENST00000408336 84 ntBASIC4.47□□□□□ -1.69
USP53Q70EK8 VDAC1P9-201ENST00000412766 841 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms