Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 EPHA4-203ENST00000409938 3363 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 USP13-203ENST00000496897 2747 ntTSL 2 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 FAM91A3P-201ENST00000456826 2544 ntBASIC9.72□□□□□ -0.85
SENP3Q9H4L4 MIR133A2-201ENST00000347538 102 ntBASIC9.72□□□□□ -0.85
SENP3Q9H4L4 RNA5-8SP4-201ENST00000365096 150 ntBASIC9.72□□□□□ -0.85
SENP3Q9H4L4 AL355796.1-201ENST00000406706 323 ntBASIC9.72□□□□□ -0.85
SENP3Q9H4L4 BX510359.3-201ENST00000422168 306 ntBASIC9.72□□□□□ -0.85
SENP3Q9H4L4 AL031722.1-201ENST00000570247 220 ntTSL 5 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 AL359922.2-201ENST00000581788 3017 ntBASIC9.72□□□□□ -0.85
SENP3Q9H4L4 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 RMST-209ENST00000639542 3269 ntTSL 5 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
SENP3Q9H4L4 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 THAP9-201ENST00000302236 3808 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 CD46-209ENST00000367047 3089 ntTSL 5 BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 ZNF402P-201ENST00000404435 3100 ntBASIC9.71□□□□□ -0.85
SENP3Q9H4L4 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
SENP3Q9H4L4 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC9.71□□□□□ -0.86
SENP3Q9H4L4 RNU6-1017P-201ENST00000363613 106 ntBASIC9.71□□□□□ -0.86
SENP3Q9H4L4 Y_RNA.205-201ENST00000364128 113 ntBASIC9.71□□□□□ -0.86
SENP3Q9H4L4 LCN1P2-201ENST00000372030 223 ntBASIC9.71□□□□□ -0.86
SENP3Q9H4L4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC9.71□□□□□ -0.86
SENP3Q9H4L4 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
SENP3Q9H4L4 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.86
SENP3Q9H4L4 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC9.71□□□□□ -0.86
SENP3Q9H4L4 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC9.71□□□□□ -0.86
SENP3Q9H4L4 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC9.71□□□□□ -0.86
SENP3Q9H4L4 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 UBE2V1-204ENST00000371677 2459 ntTSL 2 BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 MIR6768-201ENST00000610734 72 ntBASIC9.7□□□□□ -0.86
SENP3Q9H4L4 AL021997.2-201ENST00000615674 271 ntBASIC9.7□□□□□ -0.86
SENP3Q9H4L4 Six3os1_1.1-201ENST00000620900 87 ntBASIC9.7□□□□□ -0.86
SENP3Q9H4L4 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC9.7□□□□□ -0.86
SENP3Q9H4L4 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 NCALD-203ENST00000395923 3808 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 DEFB108F-201ENST00000344638 222 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 RNA5SP514-201ENST00000363717 111 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 RNU4-13P-201ENST00000364019 141 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 SNORD77.3-201ENST00000391113 65 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 SNORA17A-201ENST00000391185 133 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 EI24P2-201ENST00000397776 1076 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 AC008065.1-201ENST00000428525 348 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 SNRPBP1-201ENST00000443634 282 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 AC125238.1-201ENST00000448842 249 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 RN7SL132P-201ENST00000478131 296 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 RNU6-63P-201ENST00000516690 95 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 AC091544.4-201ENST00000555268 342 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 MIR3136-201ENST00000583498 78 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 SNORA17.5-201ENST00000630429 132 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 AC005261.2-201ENST00000593427 4258 ntBASIC9.69□□□□□ -0.86
SENP3Q9H4L4 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC9.69□□□□□ -0.86
SENP3Q9H4L4 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms