Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
VPS28Q9UK41 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS28Q9UK41 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS28Q9UK41 AP005242.2-201ENST00000580065 1175 ntBASIC19.66■□□□□ 0.74
VPS28Q9UK41 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
VPS28Q9UK41 LINC01023-201ENST00000606054 436 ntBASIC19.66■□□□□ 0.74
VPS28Q9UK41 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VPS28Q9UK41 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
VPS28Q9UK41 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS28Q9UK41 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 AL158211.5-201ENST00000623583 2518 ntBASIC19.65■□□□□ 0.74
VPS28Q9UK41 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 SDHAP1-207ENST00000440850 2000 ntBASIC19.65■□□□□ 0.74
VPS28Q9UK41 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 MFAP1P1-201ENST00000442257 1255 ntBASIC19.65■□□□□ 0.74
VPS28Q9UK41 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 NAPSB-206ENST00000562112 1266 ntBASIC19.65■□□□□ 0.74
VPS28Q9UK41 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS28Q9UK41 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS28Q9UK41 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
VPS28Q9UK41 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
VPS28Q9UK41 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS28Q9UK41 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VPS28Q9UK41 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS28Q9UK41 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 CYP2D8P-201ENST00000433633 1490 ntBASIC19.63■□□□□ 0.73
VPS28Q9UK41 AC096733.2-201ENST00000609937 1394 ntBASIC19.63■□□□□ 0.73
VPS28Q9UK41 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
VPS28Q9UK41 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS28Q9UK41 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms