Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM39Q9HCM9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 AC087499.1-201ENST00000418141 1075 ntBASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 AL390955.1-201ENST00000428694 934 ntBASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM39Q9HCM9 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 TSPY21P-201ENST00000433481 731 ntBASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
TRIM39Q9HCM9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 KRT8P11-201ENST00000409686 1436 ntBASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 MFAP1P1-201ENST00000442257 1255 ntBASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 PRSS44-201ENST00000515154 1146 ntBASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM39Q9HCM9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 KRT8P9-201ENST00000558927 1449 ntBASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms