Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL25A1Q9BXS0 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.41■□□□□ 0.7
COL25A1Q9BXS0 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL25A1Q9BXS0 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL25A1Q9BXS0 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.41■□□□□ 0.7
COL25A1Q9BXS0 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.41■□□□□ 0.7
COL25A1Q9BXS0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 MTDHP3-201ENST00000594186 672 ntBASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.4■□□□□ 0.7
COL25A1Q9BXS0 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 AC012640.2-201ENST00000561606 901 ntBASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 AL359881.2-201ENST00000602973 570 ntBASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 AC093512.1-201ENST00000617969 520 ntBASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL25A1Q9BXS0 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.38■□□□□ 0.69
COL25A1Q9BXS0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 AC242852.2-201ENST00000615738 1807 ntBASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 MCCD1P2-201ENST00000423228 335 ntBASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 KRT18P23-201ENST00000435622 1283 ntBASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 GAPDHP21-201ENST00000450301 1010 ntBASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 ALG1L5P-201ENST00000482043 771 ntBASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 AC069262.1-201ENST00000539058 672 ntBASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.37■□□□□ 0.69
COL25A1Q9BXS0 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.36■□□□□ 0.69
COL25A1Q9BXS0 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL25A1Q9BXS0 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL25A1Q9BXS0 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms