Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 AL512604.3-201ENST00000569583 964 ntBASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 AC063952.2-201ENST00000498792 1227 ntBASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAIPQ9BWF2 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAIPQ9BWF2 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 KRT8P11-201ENST00000409686 1436 ntBASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 AK4P3-201ENST00000418260 669 ntBASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 AC117947.1-201ENST00000427448 529 ntBASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 WWOX-216ENST00000569818 525 ntBASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 NTF6B-201ENST00000591913 560 ntBASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAIPQ9BWF2 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.89■□□□□ 0.94
TRAIPQ9BWF2 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRAIPQ9BWF2 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.89■□□□□ 0.94
TRAIPQ9BWF2 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.89■□□□□ 0.94
TRAIPQ9BWF2 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 FAM8A6P-201ENST00000407496 1135 ntBASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.89■□□□□ 0.93
TRAIPQ9BWF2 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms