Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 AC004951.3-201ENST00000418645 1148 ntBASIC14.8□□□□□ -0.04
CCDC140Q96MF4 AC091390.4-202ENST00000476426 537 ntBASIC14.8□□□□□ -0.04
CCDC140Q96MF4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 AC113410.3-201ENST00000623366 203 ntBASIC14.8□□□□□ -0.04
CCDC140Q96MF4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 SRI-203ENST00000419179 1307 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 TNXA-203ENST00000507684 2038 ntBASIC14.8□□□□□ -0.04
CCDC140Q96MF4 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 KRT8P11-201ENST00000409686 1436 ntBASIC14.79□□□□□ -0.04
CCDC140Q96MF4 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 AC011298.2-201ENST00000617989 482 ntBASIC14.79□□□□□ -0.04
CCDC140Q96MF4 AL049637.2-201ENST00000641778 930 ntBASIC14.79□□□□□ -0.04
CCDC140Q96MF4 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC140Q96MF4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 B3GAT3P1-201ENST00000471720 806 ntBASIC14.78□□□□□ -0.04
CCDC140Q96MF4 AC011506.1-201ENST00000474329 610 ntBASIC14.78□□□□□ -0.04
CCDC140Q96MF4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 Z99916.2-201ENST00000604037 246 ntBASIC14.78□□□□□ -0.04
CCDC140Q96MF4 AP001412.1-201ENST00000608405 714 ntBASIC14.78□□□□□ -0.04
CCDC140Q96MF4 MIR6786-201ENST00000616843 113 ntBASIC14.78□□□□□ -0.04
CCDC140Q96MF4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC140Q96MF4 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms