Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC084121.3-201ENST00000641716 218 ntBASIC19.46■□□□□ 0.71
TTC28Q96AY4 AC105233.6-201ENST00000642093 218 ntBASIC19.46■□□□□ 0.71
TTC28Q96AY4 AC005229.4-201ENST00000610085 2198 ntBASIC19.46■□□□□ 0.71
TTC28Q96AY4 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TTC28Q96AY4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TTC28Q96AY4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TTC28Q96AY4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TTC28Q96AY4 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TTC28Q96AY4 AC040169.1-201ENST00000565382 521 ntBASIC19.45■□□□□ 0.7
TTC28Q96AY4 AC005332.3-201ENST00000589904 676 ntBASIC19.45■□□□□ 0.7
TTC28Q96AY4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TTC28Q96AY4 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TTC28Q96AY4 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.45■□□□□ 0.7
TTC28Q96AY4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 AL592071.1-201ENST00000611956 408 ntBASIC19.45■□□□□ 0.7
TTC28Q96AY4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TTC28Q96AY4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.45■□□□□ 0.7
TTC28Q96AY4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TTC28Q96AY4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TTC28Q96AY4 AC005034.1-201ENST00000426657 489 ntBASIC19.44■□□□□ 0.7
TTC28Q96AY4 GPAT2P1-201ENST00000444924 1672 ntBASIC19.44■□□□□ 0.7
TTC28Q96AY4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TTC28Q96AY4 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.44■□□□□ 0.7
TTC28Q96AY4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.44■□□□□ 0.7
TTC28Q96AY4 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TTC28Q96AY4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TTC28Q96AY4 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TTC28Q96AY4 VENTXP7-201ENST00000475503 772 ntBASIC19.44■□□□□ 0.7
TTC28Q96AY4 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.44■□□□□ 0.7
TTC28Q96AY4 RNA5SP415-201ENST00000517246 115 ntBASIC19.44■□□□□ 0.7
TTC28Q96AY4 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TTC28Q96AY4 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
TTC28Q96AY4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 MIR3917-201ENST00000580971 93 ntBASIC19.43■□□□□ 0.7
TTC28Q96AY4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.43■□□□□ 0.7
TTC28Q96AY4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TTC28Q96AY4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 HLA-J-201ENST00000462773 1622 ntBASIC19.42■□□□□ 0.7
TTC28Q96AY4 TMEM179-206ENST00000616017 1645 ntBASIC19.42■□□□□ 0.7
TTC28Q96AY4 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 NUS1P2-201ENST00000417358 873 ntBASIC19.42■□□□□ 0.7
TTC28Q96AY4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 MTDHP5-201ENST00000598980 586 ntBASIC19.42■□□□□ 0.7
TTC28Q96AY4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TTC28Q96AY4 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TTC28Q96AY4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.42■□□□□ 0.7
TTC28Q96AY4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TTC28Q96AY4 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.41■□□□□ 0.7
TTC28Q96AY4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TTC28Q96AY4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms