Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.83■□□□□ 0.76
ATG4AQ8WYN0 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
ATG4AQ8WYN0 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATG4AQ8WYN0 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.83■□□□□ 0.76
ATG4AQ8WYN0 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 FEM1AP3-201ENST00000403722 1741 ntBASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 AC133041.1-202ENST00000642053 222 ntBASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4AQ8WYN0 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 AC005082.1-201ENST00000413042 2259 ntBASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 Z98044.1-201ENST00000632503 1764 ntBASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 UNC93B4-201ENST00000505679 747 ntBASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 AC142086.2-201ENST00000569753 217 ntBASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4AQ8WYN0 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4AQ8WYN0 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4AQ8WYN0 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms