Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.43■□□□□ 0.7
USP39Q53GS9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
USP39Q53GS9 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USP39Q53GS9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.42■□□□□ 0.7
USP39Q53GS9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USP39Q53GS9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.42■□□□□ 0.7
USP39Q53GS9 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.42■□□□□ 0.7
USP39Q53GS9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.42■□□□□ 0.7
USP39Q53GS9 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.42■□□□□ 0.7
USP39Q53GS9 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.42■□□□□ 0.7
USP39Q53GS9 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.42■□□□□ 0.7
USP39Q53GS9 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.42■□□□□ 0.7
USP39Q53GS9 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
USP39Q53GS9 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
USP39Q53GS9 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.42■□□□□ 0.7
USP39Q53GS9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.42■□□□□ 0.7
USP39Q53GS9 AIRN-201ENST00000601203 4374 ntBASIC19.42■□□□□ 0.7
USP39Q53GS9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.42■□□□□ 0.7
USP39Q53GS9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP39Q53GS9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.41■□□□□ 0.7
USP39Q53GS9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
USP39Q53GS9 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
USP39Q53GS9 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.41■□□□□ 0.7
USP39Q53GS9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.41■□□□□ 0.7
USP39Q53GS9 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
USP39Q53GS9 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.41■□□□□ 0.7
USP39Q53GS9 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.41■□□□□ 0.7
USP39Q53GS9 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.41■□□□□ 0.7
USP39Q53GS9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP39Q53GS9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.41■□□□□ 0.7
USP39Q53GS9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
USP39Q53GS9 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP39Q53GS9 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USP39Q53GS9 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP39Q53GS9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP39Q53GS9 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP39Q53GS9 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP39Q53GS9 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
USP39Q53GS9 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.4■□□□□ 0.7
USP39Q53GS9 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP39Q53GS9 AL671277.2-201ENST00000458060 996 ntBASIC19.4■□□□□ 0.7
USP39Q53GS9 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.4■□□□□ 0.7
USP39Q53GS9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.4■□□□□ 0.7
USP39Q53GS9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.4■□□□□ 0.7
USP39Q53GS9 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.4■□□□□ 0.7
USP39Q53GS9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP39Q53GS9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP39Q53GS9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP39Q53GS9 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.4■□□□□ 0.7
USP39Q53GS9 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP39Q53GS9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP39Q53GS9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP39Q53GS9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.39■□□□□ 0.7
USP39Q53GS9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP39Q53GS9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.39■□□□□ 0.69
USP39Q53GS9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
USP39Q53GS9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP39Q53GS9 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP39Q53GS9 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.39■□□□□ 0.69
USP39Q53GS9 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.39■□□□□ 0.69
USP39Q53GS9 AC093458.2-201ENST00000623150 629 ntBASIC19.39■□□□□ 0.69
USP39Q53GS9 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.39■□□□□ 0.69
USP39Q53GS9 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP39Q53GS9 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP39Q53GS9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP39Q53GS9 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
USP39Q53GS9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP39Q53GS9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP39Q53GS9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP39Q53GS9 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP39Q53GS9 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP39Q53GS9 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP39Q53GS9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP39Q53GS9 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.38■□□□□ 0.69
USP39Q53GS9 AL359075.1-203ENST00000462729 1002 ntBASIC19.38■□□□□ 0.69
USP39Q53GS9 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
USP39Q53GS9 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP39Q53GS9 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms