Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP41Q3LFD5 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 TSPY21P-201ENST00000433481 731 ntBASIC20.32■□□□□ 0.84
USP41Q3LFD5 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 AC009947.2-201ENST00000444014 672 ntBASIC20.32■□□□□ 0.84
USP41Q3LFD5 AL671277.2-201ENST00000458060 996 ntBASIC20.32■□□□□ 0.84
USP41Q3LFD5 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.32■□□□□ 0.84
USP41Q3LFD5 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP41Q3LFD5 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP41Q3LFD5 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP41Q3LFD5 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP41Q3LFD5 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 FAM86EP-206ENST00000510506 987 ntBASIC20.31■□□□□ 0.84
USP41Q3LFD5 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP41Q3LFD5 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP41Q3LFD5 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP41Q3LFD5 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP41Q3LFD5 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USP41Q3LFD5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP41Q3LFD5 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP41Q3LFD5 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.31■□□□□ 0.84
USP41Q3LFD5 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
USP41Q3LFD5 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
USP41Q3LFD5 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 PCED1CP-201ENST00000419887 785 ntBASIC20.3■□□□□ 0.84
USP41Q3LFD5 TSPY23P-201ENST00000440136 739 ntBASIC20.3■□□□□ 0.84
USP41Q3LFD5 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.3■□□□□ 0.84
USP41Q3LFD5 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
USP41Q3LFD5 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP41Q3LFD5 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.3■□□□□ 0.84
USP41Q3LFD5 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
USP41Q3LFD5 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.29■□□□□ 0.84
USP41Q3LFD5 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.29■□□□□ 0.84
USP41Q3LFD5 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.29■□□□□ 0.84
USP41Q3LFD5 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.29■□□□□ 0.84
USP41Q3LFD5 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
USP41Q3LFD5 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
USP41Q3LFD5 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP41Q3LFD5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms