Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.35■□□□□ 0.53
COL28A1Q2UY09 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL28A1Q2UY09 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 AC009078.2-202ENST00000463353 338 ntBASIC18.34■□□□□ 0.53
COL28A1Q2UY09 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 UNC93B7-201ENST00000509439 705 ntBASIC18.34■□□□□ 0.53
COL28A1Q2UY09 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 ZNF444P1-201ENST00000559497 298 ntBASIC18.34■□□□□ 0.53
COL28A1Q2UY09 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 AC139530.3-201ENST00000620344 690 ntBASIC18.34■□□□□ 0.53
COL28A1Q2UY09 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 AL020996.1-203ENST00000536896 2307 ntBASIC18.34■□□□□ 0.53
COL28A1Q2UY09 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL28A1Q2UY09 PTBP1P-201ENST00000554374 1601 ntBASIC18.34■□□□□ 0.53
COL28A1Q2UY09 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL28A1Q2UY09 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL28A1Q2UY09 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
COL28A1Q2UY09 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.33■□□□□ 0.53
COL28A1Q2UY09 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 AL512604.3-201ENST00000569583 964 ntBASIC18.33■□□□□ 0.52
COL28A1Q2UY09 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.33■□□□□ 0.52
COL28A1Q2UY09 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 AL162377.1-201ENST00000618844 1793 ntBASIC18.32■□□□□ 0.52
COL28A1Q2UY09 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 HLA-G-203ENST00000376818 1127 ntBASIC18.32■□□□□ 0.52
COL28A1Q2UY09 AC112907.2-201ENST00000448639 330 ntBASIC18.32■□□□□ 0.52
COL28A1Q2UY09 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 NPAP1P7-201ENST00000613027 823 ntBASIC18.32■□□□□ 0.52
COL28A1Q2UY09 AC083849.1-201ENST00000615227 514 ntBASIC18.32■□□□□ 0.52
COL28A1Q2UY09 AC011298.2-201ENST00000617989 482 ntBASIC18.32■□□□□ 0.52
COL28A1Q2UY09 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 AC092338.2-201ENST00000568827 1415 ntBASIC18.32■□□□□ 0.52
COL28A1Q2UY09 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL28A1Q2UY09 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL28A1Q2UY09 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms