Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC083880.1-201ENST00000608266 535 ntBASIC18.74■□□□□ 0.59
PKNOX1P55347 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
PKNOX1P55347 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.74■□□□□ 0.59
PKNOX1P55347 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PKNOX1P55347 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
PKNOX1P55347 SDHAP1-207ENST00000440850 2000 ntBASIC18.73■□□□□ 0.59
PKNOX1P55347 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.73■□□□□ 0.59
PKNOX1P55347 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 TUBB8P6-201ENST00000436895 1288 ntBASIC18.73■□□□□ 0.59
PKNOX1P55347 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.73■□□□□ 0.59
PKNOX1P55347 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
PKNOX1P55347 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.73■□□□□ 0.59
PKNOX1P55347 AL138781.1-201ENST00000566567 1274 ntBASIC18.73■□□□□ 0.59
PKNOX1P55347 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.73■□□□□ 0.59
PKNOX1P55347 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
PKNOX1P55347 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
PKNOX1P55347 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PKNOX1P55347 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.73■□□□□ 0.59
PKNOX1P55347 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.73■□□□□ 0.59
PKNOX1P55347 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PKNOX1P55347 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
PKNOX1P55347 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 AC006333.2-201ENST00000607957 2099 ntBASIC18.72■□□□□ 0.59
PKNOX1P55347 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
PKNOX1P55347 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
PKNOX1P55347 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
PKNOX1P55347 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
PKNOX1P55347 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PKNOX1P55347 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
PKNOX1P55347 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.72■□□□□ 0.59
PKNOX1P55347 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.72■□□□□ 0.59
PKNOX1P55347 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.72■□□□□ 0.59
PKNOX1P55347 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PKNOX1P55347 SOX15-203ENST00000570788 1093 ntBASIC18.72■□□□□ 0.59
PKNOX1P55347 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.72■□□□□ 0.59
PKNOX1P55347 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.72■□□□□ 0.59
PKNOX1P55347 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
PKNOX1P55347 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.72■□□□□ 0.59
PKNOX1P55347 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PKNOX1P55347 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
PKNOX1P55347 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PKNOX1P55347 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
PKNOX1P55347 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.71■□□□□ 0.59
PKNOX1P55347 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.71■□□□□ 0.59
PKNOX1P55347 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
PKNOX1P55347 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.71■□□□□ 0.59
PKNOX1P55347 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.71■□□□□ 0.59
PKNOX1P55347 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.71■□□□□ 0.59
PKNOX1P55347 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.71■□□□□ 0.59
PKNOX1P55347 AC008687.6-201ENST00000596318 630 ntBASIC18.71■□□□□ 0.59
PKNOX1P55347 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
PKNOX1P55347 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PKNOX1P55347 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.71■□□□□ 0.59
PKNOX1P55347 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms