Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC22.08■■□□□ 1.13
HMGCS2P54868 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC22.08■■□□□ 1.13
HMGCS2P54868 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC22.08■■□□□ 1.13
HMGCS2P54868 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC22.08■■□□□ 1.13
HMGCS2P54868 AC024243.1-201ENST00000609234 778 ntBASIC22.08■■□□□ 1.13
HMGCS2P54868 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC22.08■■□□□ 1.13
HMGCS2P54868 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC22.08■■□□□ 1.13
HMGCS2P54868 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGCS2P54868 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
HMGCS2P54868 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGCS2P54868 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22.08■■□□□ 1.12
HMGCS2P54868 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
HMGCS2P54868 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC22.07■■□□□ 1.12
HMGCS2P54868 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 AC034232.1-201ENST00000506026 1064 ntBASIC22.07■■□□□ 1.12
HMGCS2P54868 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC22.07■■□□□ 1.12
HMGCS2P54868 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC22.07■■□□□ 1.12
HMGCS2P54868 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 AC092119.3-201ENST00000612618 583 ntBASIC22.07■■□□□ 1.12
HMGCS2P54868 NPAP1P7-201ENST00000613027 823 ntBASIC22.07■■□□□ 1.12
HMGCS2P54868 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC22.07■■□□□ 1.12
HMGCS2P54868 VPS72-207ENST00000640458 689 ntTSL 5 BASIC22.07■■□□□ 1.12
HMGCS2P54868 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC22.07■■□□□ 1.12
HMGCS2P54868 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC22.07■■□□□ 1.12
HMGCS2P54868 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGCS2P54868 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGCS2P54868 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGCS2P54868 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC22.06■■□□□ 1.12
HMGCS2P54868 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGCS2P54868 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
HMGCS2P54868 AL023284.2-201ENST00000405850 579 ntBASIC22.06■■□□□ 1.12
HMGCS2P54868 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC22.06■■□□□ 1.12
HMGCS2P54868 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC22.06■■□□□ 1.12
HMGCS2P54868 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC22.06■■□□□ 1.12
HMGCS2P54868 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGCS2P54868 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC22.06■■□□□ 1.12
HMGCS2P54868 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGCS2P54868 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
HMGCS2P54868 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC22.06■■□□□ 1.12
HMGCS2P54868 AC112907.3-201ENST00000577781 2400 ntBASIC22.06■■□□□ 1.12
HMGCS2P54868 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.06■■□□□ 1.12
HMGCS2P54868 GOLGA6L5P-202ENST00000515341 1828 ntBASIC22.06■■□□□ 1.12
HMGCS2P54868 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGCS2P54868 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
HMGCS2P54868 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGCS2P54868 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
HMGCS2P54868 LBX2-AS1-202ENST00000603175 2083 ntBASIC22.05■■□□□ 1.12
HMGCS2P54868 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC22.05■■□□□ 1.12
HMGCS2P54868 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22.05■■□□□ 1.12
HMGCS2P54868 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
HMGCS2P54868 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
HMGCS2P54868 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC22.05■■□□□ 1.12
HMGCS2P54868 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
HMGCS2P54868 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC22.05■■□□□ 1.12
HMGCS2P54868 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
HMGCS2P54868 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC22.05■■□□□ 1.12
HMGCS2P54868 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGCS2P54868 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC22.05■■□□□ 1.12
HMGCS2P54868 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC22.05■■□□□ 1.12
HMGCS2P54868 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC22.05■■□□□ 1.12
HMGCS2P54868 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGCS2P54868 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
HMGCS2P54868 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGCS2P54868 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
HMGCS2P54868 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGCS2P54868 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGCS2P54868 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC22.04■■□□□ 1.12
HMGCS2P54868 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGCS2P54868 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
HMGCS2P54868 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGCS2P54868 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGCS2P54868 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC22.04■■□□□ 1.12
HMGCS2P54868 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC22.04■■□□□ 1.12
HMGCS2P54868 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC22.04■■□□□ 1.12
HMGCS2P54868 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGCS2P54868 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.04■■□□□ 1.12
HMGCS2P54868 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
HMGCS2P54868 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGCS2P54868 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
HMGCS2P54868 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGCS2P54868 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGCS2P54868 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC22.03■■□□□ 1.12
HMGCS2P54868 LINC01006-201ENST00000333319 2292 ntBASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms