Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A4P53420 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A4P53420 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A4P53420 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.49■□□□□ 0.87
COL4A4P53420 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.49■□□□□ 0.87
COL4A4P53420 AL845331.1-201ENST00000424978 1190 ntBASIC20.49■□□□□ 0.87
COL4A4P53420 EMBP1-201ENST00000458200 901 ntBASIC20.49■□□□□ 0.87
COL4A4P53420 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A4P53420 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.49■□□□□ 0.87
COL4A4P53420 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A4P53420 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A4P53420 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A4P53420 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A4P53420 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A4P53420 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A4P53420 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL4A4P53420 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL4A4P53420 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.49■□□□□ 0.87
COL4A4P53420 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.49■□□□□ 0.87
COL4A4P53420 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.49■□□□□ 0.87
COL4A4P53420 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A4P53420 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.48■□□□□ 0.87
COL4A4P53420 FAAHP1-202ENST00000446499 1238 ntBASIC20.48■□□□□ 0.87
COL4A4P53420 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.48■□□□□ 0.87
COL4A4P53420 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A4P53420 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A4P53420 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.48■□□□□ 0.87
COL4A4P53420 SLC25A6P4-201ENST00000586535 553 ntBASIC20.48■□□□□ 0.87
COL4A4P53420 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A4P53420 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A4P53420 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.48■□□□□ 0.87
COL4A4P53420 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A4P53420 AC073130.3-201ENST00000624389 2278 ntBASIC20.48■□□□□ 0.87
COL4A4P53420 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL4A4P53420 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL4A4P53420 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.48■□□□□ 0.87
COL4A4P53420 AC112907.3-201ENST00000577781 2400 ntBASIC20.48■□□□□ 0.87
COL4A4P53420 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL4A4P53420 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.48■□□□□ 0.87
COL4A4P53420 AC093525.10-201ENST00000625130 1569 ntBASIC20.48■□□□□ 0.87
COL4A4P53420 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.48■□□□□ 0.87
COL4A4P53420 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
COL4A4P53420 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
COL4A4P53420 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A4P53420 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A4P53420 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A4P53420 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.47■□□□□ 0.87
COL4A4P53420 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.47■□□□□ 0.87
COL4A4P53420 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A4P53420 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.47■□□□□ 0.87
COL4A4P53420 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL4A4P53420 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
COL4A4P53420 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.47■□□□□ 0.87
COL4A4P53420 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL4A4P53420 GPALPP1-207ENST00000611650 899 ntBASIC20.47■□□□□ 0.87
COL4A4P53420 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL4A4P53420 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL4A4P53420 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
COL4A4P53420 KRT8P11-201ENST00000409686 1436 ntBASIC20.47■□□□□ 0.87
COL4A4P53420 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.46■□□□□ 0.87
COL4A4P53420 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.46■□□□□ 0.87
COL4A4P53420 MIR4674-201ENST00000582457 87 ntBASIC20.46■□□□□ 0.87
COL4A4P53420 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL4A4P53420 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL4A4P53420 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL4A4P53420 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 AC036111.1-201ENST00000533973 1582 ntBASIC20.46■□□□□ 0.87
COL4A4P53420 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
COL4A4P53420 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A4P53420 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A4P53420 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
COL4A4P53420 AP002383.4-201ENST00000442518 975 ntBASIC20.45■□□□□ 0.86
COL4A4P53420 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.45■□□□□ 0.86
COL4A4P53420 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A4P53420 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.45■□□□□ 0.86
COL4A4P53420 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A4P53420 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms