Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.29■□□□□ 0.68
COL4A2P08572 RNF126P1-202ENST00000569893 925 ntBASIC19.29■□□□□ 0.68
COL4A2P08572 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.29■□□□□ 0.68
COL4A2P08572 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.29■□□□□ 0.68
COL4A2P08572 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A2P08572 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A2P08572 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A2P08572 AL391807.1-203ENST00000604392 2365 ntBASIC19.29■□□□□ 0.68
COL4A2P08572 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A2P08572 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A2P08572 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A2P08572 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.28■□□□□ 0.68
COL4A2P08572 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL4A2P08572 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 DRAXINP1-201ENST00000437611 948 ntBASIC19.28■□□□□ 0.68
COL4A2P08572 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.28■□□□□ 0.68
COL4A2P08572 MIR3917-201ENST00000580971 93 ntBASIC19.28■□□□□ 0.68
COL4A2P08572 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL4A2P08572 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.28■□□□□ 0.68
COL4A2P08572 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.28■□□□□ 0.68
COL4A2P08572 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.28■□□□□ 0.68
COL4A2P08572 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL4A2P08572 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL4A2P08572 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL4A2P08572 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.28■□□□□ 0.68
COL4A2P08572 MCCD1P1-208ENST00000445732 328 ntBASIC19.28■□□□□ 0.68
COL4A2P08572 EMBP1-201ENST00000458200 901 ntBASIC19.28■□□□□ 0.68
COL4A2P08572 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.28■□□□□ 0.68
COL4A2P08572 AC023511.2-201ENST00000618803 211 ntBASIC19.28■□□□□ 0.68
COL4A2P08572 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.28■□□□□ 0.68
COL4A2P08572 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.28■□□□□ 0.68
COL4A2P08572 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A2P08572 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.27■□□□□ 0.68
COL4A2P08572 KRT18P1-202ENST00000452408 1331 ntBASIC19.27■□□□□ 0.68
COL4A2P08572 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A2P08572 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A2P08572 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.27■□□□□ 0.68
COL4A2P08572 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A2P08572 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL4A2P08572 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.27■□□□□ 0.68
COL4A2P08572 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A2P08572 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.27■□□□□ 0.68
COL4A2P08572 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A2P08572 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL4A2P08572 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
COL4A2P08572 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL4A2P08572 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A2P08572 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.27■□□□□ 0.67
COL4A2P08572 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A2P08572 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A2P08572 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A2P08572 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A2P08572 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL4A2P08572 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
COL4A2P08572 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A2P08572 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A2P08572 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.26■□□□□ 0.67
COL4A2P08572 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.26■□□□□ 0.67
COL4A2P08572 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
COL4A2P08572 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL4A2P08572 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL4A2P08572 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A2P08572 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A2P08572 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
COL4A2P08572 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.25■□□□□ 0.67
COL4A2P08572 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.25■□□□□ 0.67
COL4A2P08572 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A2P08572 SLC25A6P4-201ENST00000586535 553 ntBASIC19.25■□□□□ 0.67
COL4A2P08572 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.25■□□□□ 0.67
COL4A2P08572 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A2P08572 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A2P08572 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A2P08572 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A2P08572 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A2P08572 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A2P08572 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.25■□□□□ 0.67
COL4A2P08572 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A2P08572 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A2P08572 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A2P08572 AL391422.3-201ENST00000603791 2761 ntBASIC19.25■□□□□ 0.67
COL4A2P08572 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL4A2P08572 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms