Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC29.87■■■□□ 2.37
PCF11O94913 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC29.86■■■□□ 2.37
PCF11O94913 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
PCF11O94913 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC29.86■■■□□ 2.37
PCF11O94913 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
PCF11O94913 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
PCF11O94913 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
PCF11O94913 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
PCF11O94913 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC29.86■■■□□ 2.37
PCF11O94913 CNP-204ENST00000472031 1019 ntTSL 2 BASIC29.86■■■□□ 2.37
PCF11O94913 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
PCF11O94913 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC29.86■■■□□ 2.37
PCF11O94913 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
PCF11O94913 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC29.85■■■□□ 2.37
PCF11O94913 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
PCF11O94913 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC29.85■■■□□ 2.37
PCF11O94913 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC29.85■■■□□ 2.37
PCF11O94913 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
PCF11O94913 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
PCF11O94913 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
PCF11O94913 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
PCF11O94913 HBZP1-201ENST00000354915 429 ntBASIC29.85■■■□□ 2.37
PCF11O94913 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
PCF11O94913 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC29.85■■■□□ 2.37
PCF11O94913 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC29.85■■■□□ 2.37
PCF11O94913 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC29.85■■■□□ 2.37
PCF11O94913 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
PCF11O94913 WDR6-223ENST00000627177 207 ntTSL 2 BASIC29.85■■■□□ 2.37
PCF11O94913 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
PCF11O94913 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC29.85■■■□□ 2.37
PCF11O94913 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC29.84■■■□□ 2.37
PCF11O94913 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC29.84■■■□□ 2.37
PCF11O94913 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC29.84■■■□□ 2.37
PCF11O94913 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC29.84■■■□□ 2.37
PCF11O94913 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
PCF11O94913 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC29.83■■■□□ 2.37
PCF11O94913 PTK2-216ENST00000519881 863 ntTSL 3 BASIC29.83■■■□□ 2.37
PCF11O94913 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC29.83■■■□□ 2.37
PCF11O94913 AL031432.5-201ENST00000641059 760 ntBASIC29.83■■■□□ 2.37
PCF11O94913 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
PCF11O94913 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
PCF11O94913 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
PCF11O94913 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
PCF11O94913 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
PCF11O94913 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC29.82■■■□□ 2.36
PCF11O94913 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
PCF11O94913 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
PCF11O94913 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC29.82■■■□□ 2.36
PCF11O94913 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC29.82■■■□□ 2.36
PCF11O94913 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
PCF11O94913 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC29.82■■■□□ 2.36
PCF11O94913 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
PCF11O94913 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC29.82■■■□□ 2.36
PCF11O94913 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC29.82■■■□□ 2.36
PCF11O94913 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC29.81■■■□□ 2.36
PCF11O94913 AL023284.2-201ENST00000405850 579 ntBASIC29.81■■■□□ 2.36
PCF11O94913 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 SEC1P-202ENST00000473944 940 ntBASIC29.81■■■□□ 2.36
PCF11O94913 MIR3180-5-201ENST00000583743 153 ntBASIC29.81■■■□□ 2.36
PCF11O94913 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
PCF11O94913 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC29.81■■■□□ 2.36
PCF11O94913 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC29.81■■■□□ 2.36
PCF11O94913 LY6E-213ENST00000522528 606 ntTSL 3 BASIC29.81■■■□□ 2.36
PCF11O94913 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC29.81■■■□□ 2.36
PCF11O94913 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC29.81■■■□□ 2.36
PCF11O94913 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCF11O94913 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
PCF11O94913 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC29.8■■■□□ 2.36
PCF11O94913 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC29.8■■■□□ 2.36
PCF11O94913 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms