Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 TSPY7P-201ENST00000431358 1114 ntBASIC18.73■□□□□ 0.59
VPS4BO75351 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 AC107956.1-201ENST00000494359 873 ntBASIC18.73■□□□□ 0.59
VPS4BO75351 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 AC233702.5-201ENST00000584107 538 ntBASIC18.73■□□□□ 0.59
VPS4BO75351 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS4BO75351 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS4BO75351 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS4BO75351 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS4BO75351 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS4BO75351 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
VPS4BO75351 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VPS4BO75351 AC006333.2-201ENST00000607957 2099 ntBASIC18.72■□□□□ 0.59
VPS4BO75351 HCG11-201ENST00000411553 5696 ntBASIC18.72■□□□□ 0.59
VPS4BO75351 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VPS4BO75351 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS4BO75351 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.72■□□□□ 0.59
VPS4BO75351 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.72■□□□□ 0.59
VPS4BO75351 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS4BO75351 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS4BO75351 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS4BO75351 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
VPS4BO75351 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
VPS4BO75351 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS4BO75351 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS4BO75351 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VPS4BO75351 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS4BO75351 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 POM121L13P-201ENST00000422362 380 ntBASIC18.71■□□□□ 0.59
VPS4BO75351 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS4BO75351 MIR4785-201ENST00000585005 73 ntBASIC18.71■□□□□ 0.59
VPS4BO75351 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS4BO75351 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4BO75351 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
VPS4BO75351 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.58
VPS4BO75351 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS4BO75351 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS4BO75351 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS4BO75351 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.7■□□□□ 0.58
VPS4BO75351 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS4BO75351 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS4BO75351 AC005829.2-201ENST00000571422 1056 ntBASIC18.7■□□□□ 0.58
VPS4BO75351 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS4BO75351 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS4BO75351 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS4BO75351 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS4BO75351 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4BO75351 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS4BO75351 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS4BO75351 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
VPS4BO75351 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS4BO75351 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
VPS4BO75351 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS4BO75351 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms