Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CACNA1AO00555 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CACNA1AO00555 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CACNA1AO00555 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CACNA1AO00555 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CACNA1AO00555 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.04■□□□□ 0.48
CACNA1AO00555 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.04■□□□□ 0.48
CACNA1AO00555 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CACNA1AO00555 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CACNA1AO00555 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CACNA1AO00555 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.04■□□□□ 0.48
CACNA1AO00555 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.04■□□□□ 0.48
CACNA1AO00555 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.04■□□□□ 0.48
CACNA1AO00555 AC008608.2-201ENST00000606089 416 ntBASIC18.04■□□□□ 0.48
CACNA1AO00555 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CACNA1AO00555 TMEM179-206ENST00000616017 1645 ntBASIC18.03■□□□□ 0.48
CACNA1AO00555 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CACNA1AO00555 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CACNA1AO00555 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CACNA1AO00555 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.03■□□□□ 0.48
CACNA1AO00555 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
CACNA1AO00555 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.03■□□□□ 0.48
CACNA1AO00555 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.03■□□□□ 0.48
CACNA1AO00555 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.03■□□□□ 0.48
CACNA1AO00555 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.03■□□□□ 0.48
CACNA1AO00555 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CACNA1AO00555 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CACNA1AO00555 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CACNA1AO00555 RBM17P3-201ENST00000417687 1192 ntBASIC18.03■□□□□ 0.48
CACNA1AO00555 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
CACNA1AO00555 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.03■□□□□ 0.48
CACNA1AO00555 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CACNA1AO00555 RNA5SP415-201ENST00000517246 115 ntBASIC18.03■□□□□ 0.48
CACNA1AO00555 AL591684.3-201ENST00000605187 298 ntBASIC18.03■□□□□ 0.48
CACNA1AO00555 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.03■□□□□ 0.48
CACNA1AO00555 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.02■□□□□ 0.48
CACNA1AO00555 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CACNA1AO00555 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.02■□□□□ 0.48
CACNA1AO00555 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.02■□□□□ 0.48
CACNA1AO00555 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.02■□□□□ 0.48
CACNA1AO00555 Z83851.2-201ENST00000609564 659 ntBASIC18.02■□□□□ 0.48
CACNA1AO00555 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.02■□□□□ 0.48
CACNA1AO00555 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CACNA1AO00555 GPAT2P1-201ENST00000444924 1672 ntBASIC18.02■□□□□ 0.48
CACNA1AO00555 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.02■□□□□ 0.48
CACNA1AO00555 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CACNA1AO00555 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.02■□□□□ 0.48
CACNA1AO00555 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1AO00555 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
CACNA1AO00555 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1AO00555 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
CACNA1AO00555 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1AO00555 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1AO00555 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1AO00555 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CACNA1AO00555 AC004945.1-201ENST00000416738 983 ntBASIC18.02■□□□□ 0.47
CACNA1AO00555 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.02■□□□□ 0.47
CACNA1AO00555 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.02■□□□□ 0.47
CACNA1AO00555 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.02■□□□□ 0.47
CACNA1AO00555 AC005332.3-201ENST00000589904 676 ntBASIC18.02■□□□□ 0.47
CACNA1AO00555 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.02■□□□□ 0.47
CACNA1AO00555 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.02■□□□□ 0.47
CACNA1AO00555 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.01■□□□□ 0.47
CACNA1AO00555 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.01■□□□□ 0.47
CACNA1AO00555 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.01■□□□□ 0.47
CACNA1AO00555 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.01■□□□□ 0.47
CACNA1AO00555 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.01■□□□□ 0.47
CACNA1AO00555 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.01■□□□□ 0.47
CACNA1AO00555 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.01■□□□□ 0.47
CACNA1AO00555 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CACNA1AO00555 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.01■□□□□ 0.47
CACNA1AO00555 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.01■□□□□ 0.47
CACNA1AO00555 HLA-J-201ENST00000462773 1622 ntBASIC18.01■□□□□ 0.47
CACNA1AO00555 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 MEIS3P1-201ENST00000495167 958 ntBASIC18.01■□□□□ 0.47
CACNA1AO00555 AC009533.2-201ENST00000543664 586 ntBASIC18.01■□□□□ 0.47
CACNA1AO00555 AC005225.4-201ENST00000557330 545 ntBASIC18.01■□□□□ 0.47
CACNA1AO00555 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.01■□□□□ 0.47
CACNA1AO00555 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.01■□□□□ 0.47
CACNA1AO00555 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CACNA1AO00555 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms