Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 AL391807.1-203ENST00000604392 2365 ntBASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 AC106730.1-201ENST00000566722 1090 ntBASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC17.21■□□□□ 0.35
COL6A6A6NMZ7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 AF186996.4-201ENST00000467186 377 ntBASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL6A6A6NMZ7 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 AC018712.1-201ENST00000455767 687 ntBASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A6A6NMZ7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL6A6A6NMZ7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms