Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC4.3□□□□□ -1.72
HPS3Q969F9 AC069157.1-201ENST00000421749 137 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 USP9YP18-201ENST00000425912 695 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 AC079780.1-201ENST00000428259 207 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.3□□□□□ -1.72
HPS3Q969F9 MTATP6P30-201ENST00000443540 664 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 AC006480.1-201ENST00000449887 378 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.3□□□□□ -1.72
HPS3Q969F9 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.3□□□□□ -1.72
HPS3Q969F9 snoU13.4-201ENST00000458916 104 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 AC005921.1-201ENST00000510589 286 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 RNU6-1073P-201ENST00000517182 106 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 RNU6-840P-201ENST00000517275 65 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.3□□□□□ -1.72
HPS3Q969F9 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.3□□□□□ -1.72
HPS3Q969F9 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.3□□□□□ -1.72
HPS3Q969F9 AC090572.1-201ENST00000519251 160 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 AP003034.1-201ENST00000534621 422 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.3□□□□□ -1.72
HPS3Q969F9 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.3□□□□□ -1.72
HPS3Q969F9 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.3□□□□□ -1.72
HPS3Q969F9 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.3□□□□□ -1.72
HPS3Q969F9 RBM11P1-201ENST00000604951 799 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 AL592436.1-201ENST00000605135 558 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
HPS3Q969F9 LINC02471-203ENST00000641941 4752 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HPS3Q969F9 IPO8P1-201ENST00000455509 3109 ntBASIC4.3□□□□□ -1.72
HPS3Q969F9 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HPS3Q969F9 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
HPS3Q969F9 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HPS3Q969F9 CR848007.1-201ENST00000442354 1699 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HPS3Q969F9 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HPS3Q969F9 Y_RNA.9-201ENST00000362354 101 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 RNU6-511P-201ENST00000363496 107 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 SNORA51.2-201ENST00000364595 132 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 Y_RNA.372-201ENST00000365599 102 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HPS3Q969F9 USP12PX-201ENST00000432383 1057 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.29□□□□□ -1.72
HPS3Q969F9 AC009646.1-201ENST00000510455 318 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.29□□□□□ -1.72
HPS3Q969F9 AC011352.1-201ENST00000512300 793 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.29□□□□□ -1.72
HPS3Q969F9 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.29□□□□□ -1.72
HPS3Q969F9 ERHP1-201ENST00000523006 310 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 AC090877.1-201ENST00000561418 344 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.29□□□□□ -1.72
HPS3Q969F9 MIR4293-201ENST00000584305 78 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 GLUD1P4-201ENST00000590914 418 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 AC006116.10-201ENST00000591836 581 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 Z84480.1-201ENST00000605131 311 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 MIR6875-201ENST00000617506 72 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC4.29□□□□□ -1.72
HPS3Q969F9 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HPS3Q969F9 ELF2P3-201ENST00000445099 1506 ntBASIC4.29□□□□□ -1.72
HPS3Q969F9 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.29□□□□□ -1.72
HPS3Q969F9 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.29□□□□□ -1.72
HPS3Q969F9 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HPS3Q969F9 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HPS3Q969F9 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
HPS3Q969F9 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HPS3Q969F9 AC009812.4-201ENST00000569134 1805 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
HPS3Q969F9 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HPS3Q969F9 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.28□□□□□ -1.72
HPS3Q969F9 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.28□□□□□ -1.72
HPS3Q969F9 EXOC5P1-201ENST00000510543 1969 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HPS3Q969F9 RNU6-1085P-201ENST00000363576 107 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 SNORD6-201ENST00000365444 73 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 Y_RNA.481-201ENST00000384373 102 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 Y_RNA.554-201ENST00000384672 102 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 MIR607-201ENST00000385241 96 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 AL136372.1-201ENST00000403060 228 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 BTF3P7-201ENST00000407097 488 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 MTATP6P18-201ENST00000417994 673 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 RPL21P66-201ENST00000426566 466 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 MTCO2P19-201ENST00000427513 598 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 MTATP6P4-201ENST00000427725 675 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.28□□□□□ -1.72
HPS3Q969F9 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.28□□□□□ -1.72
HPS3Q969F9 RPL23AP20-201ENST00000447965 421 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 Z99127.3-201ENST00000448158 395 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.28□□□□□ -1.72
HPS3Q969F9 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.28□□□□□ -1.72
HPS3Q969F9 RPL23AP31-201ENST00000456160 467 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.28□□□□□ -1.72
HPS3Q969F9 RAC1P2-201ENST00000511164 579 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 AC010342.1-201ENST00000514047 877 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.28□□□□□ -1.72
HPS3Q969F9 RNU6-390P-201ENST00000516259 103 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 RNA5SP309-201ENST00000516670 106 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 RNU6-1220P-201ENST00000517126 108 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.28□□□□□ -1.72
HPS3Q969F9 AC008489.1-201ENST00000524271 483 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 OR4R1P-201ENST00000529879 463 ntBASIC4.28□□□□□ -1.72
HPS3Q969F9 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.28□□□□□ -1.72
HPS3Q969F9 SNRPGP16-201ENST00000533275 226 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms