Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.35□□□□□ -2.03
COL18A1P39060 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
COL18A1P39060 MIR4474-201ENST00000579189 78 ntBASIC2.35□□□□□ -2.03
COL18A1P39060 AP001542.2-201ENST00000593141 364 ntBASIC2.35□□□□□ -2.03
COL18A1P39060 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.35□□□□□ -2.03
COL18A1P39060 AL355812.1-201ENST00000603215 216 ntBASIC2.35□□□□□ -2.03
COL18A1P39060 AC024560.3-201ENST00000608482 349 ntBASIC2.35□□□□□ -2.03
COL18A1P39060 AC073569.3-201ENST00000619055 682 ntBASIC2.35□□□□□ -2.03
COL18A1P39060 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.35□□□□□ -2.03
COL18A1P39060 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.35□□□□□ -2.03
COL18A1P39060 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
COL18A1P39060 AP001350.1-201ENST00000601906 1524 ntBASIC2.34□□□□□ -2.03
COL18A1P39060 AC016716.1-201ENST00000265882 708 ntBASIC2.34□□□□□ -2.03
COL18A1P39060 ZFAND6P1-201ENST00000434138 605 ntBASIC2.34□□□□□ -2.03
COL18A1P39060 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.34□□□□□ -2.03
COL18A1P39060 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.34□□□□□ -2.03
COL18A1P39060 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC2.34□□□□□ -2.03
COL18A1P39060 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.34□□□□□ -2.03
COL18A1P39060 AC109635.4-202ENST00000531666 412 ntBASIC2.34□□□□□ -2.03
COL18A1P39060 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC2.34□□□□□ -2.03
COL18A1P39060 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC2.34□□□□□ -2.03
COL18A1P39060 SYF2P1-201ENST00000550658 413 ntBASIC2.34□□□□□ -2.03
COL18A1P39060 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC2.34□□□□□ -2.03
COL18A1P39060 AC095057.3-201ENST00000567102 1157 ntBASIC2.34□□□□□ -2.03
COL18A1P39060 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.34□□□□□ -2.03
COL18A1P39060 API5P2-201ENST00000397055 1498 ntBASIC2.34□□□□□ -2.03
COL18A1P39060 MTND5P11-201ENST00000511037 1812 ntBASIC2.34□□□□□ -2.04
COL18A1P39060 AC110774.1-201ENST00000623567 2018 ntBASIC2.34□□□□□ -2.04
COL18A1P39060 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.34□□□□□ -2.04
COL18A1P39060 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
COL18A1P39060 RNU6-335P-201ENST00000364563 113 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 SFR1P1-201ENST00000403720 688 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 RPL23AP47-201ENST00000408017 460 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.33□□□□□ -2.04
COL18A1P39060 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.33□□□□□ -2.04
COL18A1P39060 YWHAZP8-201ENST00000436935 731 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 Z99714.1-201ENST00000450463 807 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 HMGN3P1-201ENST00000453847 193 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 HMGN2P16-201ENST00000456802 261 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
COL18A1P39060 MTCO3P35-201ENST00000485582 781 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC090453.1-201ENST00000495560 436 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.33□□□□□ -2.04
COL18A1P39060 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.33□□□□□ -2.04
COL18A1P39060 AC104057.1-201ENST00000515547 497 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 RNU1-61P-201ENST00000516107 151 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.33□□□□□ -2.04
COL18A1P39060 OR4G1P-201ENST00000588632 938 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC092954.1-201ENST00000609121 445 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 VN1R74P-201ENST00000613259 503 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 SNORA50A-202ENST00000629536 136 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AL512283.1-201ENST00000606756 1384 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC131280.1-202ENST00000624067 4211 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.33□□□□□ -2.04
COL18A1P39060 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
COL18A1P39060 UBE2V1P9-201ENST00000414760 368 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 RPL21P66-201ENST00000426566 466 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC2.33□□□□□ -2.04
COL18A1P39060 HMGB1P38-201ENST00000490557 577 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 MTND4LP22-201ENST00000508209 276 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.33□□□□□ -2.04
COL18A1P39060 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.33□□□□□ -2.04
COL18A1P39060 AL163153.1-201ENST00000554223 283 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC107954.1-201ENST00000565906 727 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC008687.2-201ENST00000597865 520 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC034102.8-201ENST00000615146 484 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 FRG1HP-204ENST00000617940 757 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC092608.3-201ENST00000625017 386 ntBASIC2.33□□□□□ -2.04
COL18A1P39060 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.33□□□□□ -2.04
COL18A1P39060 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.33□□□□□ -2.04
COL18A1P39060 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
COL18A1P39060 ZNF271P-202ENST00000465539 1970 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.32□□□□□ -2.04
COL18A1P39060 RNU6-707P-201ENST00000364647 95 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC2.32□□□□□ -2.04
COL18A1P39060 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.32□□□□□ -2.04
COL18A1P39060 OFD1P18Y-201ENST00000420889 959 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 BX322784.1-201ENST00000455793 1077 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC2.32□□□□□ -2.04
COL18A1P39060 AC087879.1-201ENST00000474343 374 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.32□□□□□ -2.04
COL18A1P39060 AC016065.2-201ENST00000514530 444 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 MTCYBP41-201ENST00000528913 1123 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.32□□□□□ -2.04
COL18A1P39060 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.32□□□□□ -2.04
COL18A1P39060 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.32□□□□□ -2.04
COL18A1P39060 AC124283.4-201ENST00000581815 456 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 AC021851.1-201ENST00000608537 1082 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.32□□□□□ -2.04
COL18A1P39060 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC2.32□□□□□ -2.04
COL18A1P39060 ZNF37BP-203ENST00000452306 1352 ntBASIC2.32□□□□□ -2.04
COL18A1P39060 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL18A1P39060 RNU4-65P-201ENST00000410473 140 ntBASIC2.31□□□□□ -2.04
COL18A1P39060 AL096701.2-201ENST00000416920 238 ntBASIC2.31□□□□□ -2.04
COL18A1P39060 PNRC2P1-201ENST00000423940 420 ntBASIC2.31□□□□□ -2.04
COL18A1P39060 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.31□□□□□ -2.04
COL18A1P39060 AL590664.1-201ENST00000448065 339 ntBASIC2.31□□□□□ -2.04
COL18A1P39060 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.31□□□□□ -2.04
COL18A1P39060 SSXP1-201ENST00000453640 473 ntBASIC2.31□□□□□ -2.04
COL18A1P39060 RNA5SP468-201ENST00000516782 93 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms