Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC139769.1-204ENST00000472297 1931 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 AC092376.2-201ENST00000622621 4116 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 AL157777.2-201ENST00000258070 137 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 MIR335-201ENST00000362173 94 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 RNA5SP305-201ENST00000362665 119 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 Y_RNA.471-201ENST00000384312 102 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 MIR135A2-201ENST00000384854 100 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 RN7SKP213-201ENST00000410746 298 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 RAC1P3-201ENST00000416129 580 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 CYCSP10-201ENST00000417973 294 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 BX842559.1-201ENST00000419615 532 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 UBE2D3P2-201ENST00000424409 445 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 AC104332.1-201ENST00000440471 797 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 RPSAP50-201ENST00000481955 852 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 MRPS33P2-201ENST00000507850 322 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 AC091144.1-201ENST00000519573 138 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 AC012433.1-201ENST00000588916 398 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 AL355877.2-201ENST00000603670 358 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 DLEU2_2.2-201ENST00000615474 90 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 AL450472.3-201ENST00000615578 367 ntBASIC5.43□□□□□ -1.54
USP3Q9Y6I4 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.43□□□□□ -1.54
USP3Q9Y6I4 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 SNURFL-201ENST00000309296 343 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 Y_RNA.26-201ENST00000362539 101 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 RNU6-288P-201ENST00000363690 104 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 SNORA70-201ENST00000384436 135 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 RNU6-146P-201ENST00000384602 108 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AL645927.1-201ENST00000396783 406 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 RNU2-43P-201ENST00000410306 190 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AC096920.1-201ENST00000423991 241 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 RPS26P47-201ENST00000427219 348 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 C4BPAP2-201ENST00000428434 478 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AC009238.2-201ENST00000431026 355 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 GAPDHP58-201ENST00000438477 1006 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 MRPL48P1-201ENST00000445390 636 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 LINC01399-202ENST00000458450 244 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 RNU6-570P-201ENST00000517051 105 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 RN7SKP92-201ENST00000517266 244 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AC126177.3-201ENST00000551839 688 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 PRPF19P1-201ENST00000584766 898 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 BDH2P1-201ENST00000602288 736 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 SNORD91B-202ENST00000608459 222 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AL451142.2-201ENST00000429076 2090 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 MAPK10-338ENST00000641647 3362 ntBASIC5.42□□□□□ -1.54
USP3Q9Y6I4 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP3Q9Y6I4 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 RNU1-76P-201ENST00000362903 159 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 RNU6-806P-201ENST00000365147 105 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AL513475.1-201ENST00000406602 315 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 COX5BP7-201ENST00000414780 274 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 DDX39BP1-205ENST00000422507 192 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AL360271.2-201ENST00000447710 161 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC073850.1-201ENST00000449243 255 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 PRELID3BP1-201ENST00000457142 540 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms