Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 MIR625-201ENST00000385047 85 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 RPL21P67-201ENST00000402896 478 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-174P-201ENST00000410406 106 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 RNU2-25P-201ENST00000411041 191 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AL160275.3-201ENST00000423876 471 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 UBE2D3P2-201ENST00000424409 445 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 EEF1B2P6-201ENST00000445713 673 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 RPL37P6-201ENST00000460682 294 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 RPL31P60-201ENST00000478450 367 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-1095P-201ENST00000516148 108 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AC009852.2-201ENST00000567898 485 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AC010547.6-201ENST00000571789 193 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AL450472.3-201ENST00000615578 367 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AP001282.2-201ENST00000616149 309 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AC127459.3-201ENST00000624328 466 ntBASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-1159P-201ENST00000362933 107 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RNU1-19P-201ENST00000363306 165 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-1155P-201ENST00000363554 107 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 U3.7-201ENST00000363668 216 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.237-201ENST00000364439 102 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 OR1L6-202ENST00000373684 1044 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.480-201ENST00000384364 102 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-14P-201ENST00000384630 106 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 MIR628-201ENST00000385229 95 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 AL590704.1-201ENST00000402856 794 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RNA5SP36-201ENST00000410197 133 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 AC090774.1-201ENST00000435925 246 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 NDUFB1P2-201ENST00000449477 176 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 CEACAMP6-201ENST00000452007 574 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-953P-201ENST00000459154 107 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 AC092754.1-201ENST00000472975 479 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-255P-201ENST00000516957 105 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 RN7SKP234-201ENST00000517173 224 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 HCG18-243ENST00000602498 327 ntTSL 3 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.86□□□□□ -1.63
HIF3AQ9Y2N7 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.84-201ENST00000363011 104 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-288P-201ENST00000363690 104 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-263P-201ENST00000363811 107 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-662P-201ENST00000384253 104 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-817P-201ENST00000391083 104 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 PCNPP3-201ENST00000393579 471 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 RPS3P2-201ENST00000421346 701 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AC092423.1-201ENST00000430165 186 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AC004383.1-201ENST00000438135 289 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AL589765.3-201ENST00000446084 462 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 RPL7L1P1-201ENST00000448259 785 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AL671862.1-201ENST00000515851 349 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 RNU5B-3P-201ENST00000516601 115 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 SCARNA16.4-201ENST00000516956 187 ntBASIC4.85□□□□□ -1.63
HIF3AQ9Y2N7 AC022868.1-201ENST00000517767 391 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms