Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 AC093732.2-201ENST00000607950 274 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 CACNA1D-201ENST00000288139 9341 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 AC106871.1-201ENST00000568324 3102 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 SNORA18-201ENST00000384416 132 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 MIR577-201ENST00000385196 96 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 Z98742.3-201ENST00000418637 326 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 RPS26P11-201ENST00000463445 348 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 RPS26P6-201ENST00000475156 348 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 AC066616.1-201ENST00000486795 413 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 AC140063.1-201ENST00000541343 259 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 AC005519.1-201ENST00000554490 601 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 RN7SL366P-201ENST00000577957 292 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 AL008638.3-201ENST00000623027 5182 ntBASIC9.92□□□□□ -0.82
SENP3Q9H4L4 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
SENP3Q9H4L4 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 MARK2P15-201ENST00000432204 2186 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 ABLIM3-201ENST00000309868 4326 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 RNA5SP140-201ENST00000364524 92 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 Y_RNA.507-201ENST00000384500 99 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 RNU6-1104P-201ENST00000384723 104 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 RPL23AP28-201ENST00000448062 470 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AURKAPS2-201ENST00000454983 333 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 RN7SL216P-201ENST00000471607 298 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 RNU6-523P-201ENST00000516304 54 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 RNU6-1256P-201ENST00000516539 103 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 RNU7-149P-201ENST00000516739 59 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AC087752.2-201ENST00000521219 281 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AC105137.2-201ENST00000569073 466 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 APOC2-205ENST00000592257 444 ntTSL 3 BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AC021443.1-201ENST00000604478 211 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 FAM27E2-201ENST00000619668 403 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.82
SENP3Q9H4L4 AC232271.1-201ENST00000602455 2715 ntBASIC9.91□□□□□ -0.82
SENP3Q9H4L4 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
SENP3Q9H4L4 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
SENP3Q9H4L4 AC079061.1-201ENST00000499579 3075 ntTSL 2 BASIC9.9□□□□□ -0.82
SENP3Q9H4L4 RN7SKP81-201ENST00000365603 331 ntBASIC9.9□□□□□ -0.82
SENP3Q9H4L4 MYL6P5-201ENST00000412707 459 ntBASIC9.9□□□□□ -0.82
SENP3Q9H4L4 RPL35AP3-201ENST00000414680 288 ntBASIC9.9□□□□□ -0.82
SENP3Q9H4L4 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC9.9□□□□□ -0.82
SENP3Q9H4L4 MYL6P3-201ENST00000436904 432 ntBASIC9.9□□□□□ -0.82
SENP3Q9H4L4 SDHCP3-201ENST00000445371 506 ntBASIC9.9□□□□□ -0.82
SENP3Q9H4L4 AC093663.1-201ENST00000497190 394 ntBASIC9.9□□□□□ -0.82
SENP3Q9H4L4 CR383656.8-201ENST00000549046 145 ntBASIC9.9□□□□□ -0.82
SENP3Q9H4L4 AC007494.1-201ENST00000562293 760 ntBASIC9.9□□□□□ -0.82
SENP3Q9H4L4 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC9.9□□□□□ -0.82
SENP3Q9H4L4 IST1-208ENST00000535424 4082 ntTSL 5 BASIC9.9□□□□□ -0.82
SENP3Q9H4L4 AC012360.3-201ENST00000610036 3449 ntBASIC9.9□□□□□ -0.82
SENP3Q9H4L4 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
SENP3Q9H4L4 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
SENP3Q9H4L4 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
SENP3Q9H4L4 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC9.9□□□□□ -0.83
SENP3Q9H4L4 LINC00964-202ENST00000510897 3534 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
SENP3Q9H4L4 AC087430.1-201ENST00000451707 3699 ntTSL 2 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 AC122713.2-201ENST00000624942 3335 ntBASIC9.89□□□□□ -0.83
SENP3Q9H4L4 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 MIR873-201ENST00000401120 77 ntBASIC9.89□□□□□ -0.83
SENP3Q9H4L4 RN7SKP151-201ENST00000410230 316 ntBASIC9.89□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms