Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC5.14□□□□□ -1.59
LIG3P49916 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.14□□□□□ -1.59
LIG3P49916 PSMD10P3-201ENST00000437000 448 ntBASIC5.14□□□□□ -1.59
LIG3P49916 FABP5P14-201ENST00000437273 393 ntBASIC5.14□□□□□ -1.59
LIG3P49916 AF228730.2-201ENST00000438784 848 ntBASIC5.14□□□□□ -1.59
LIG3P49916 RPL23AP89-201ENST00000439324 255 ntBASIC5.14□□□□□ -1.59
LIG3P49916 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC5.14□□□□□ -1.59
LIG3P49916 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC5.14□□□□□ -1.59
LIG3P49916 RN7SL97P-201ENST00000486780 299 ntBASIC5.14□□□□□ -1.59
LIG3P49916 AC073073.1-201ENST00000493920 463 ntBASIC5.14□□□□□ -1.59
LIG3P49916 RPS27P27-201ENST00000498779 255 ntBASIC5.14□□□□□ -1.59
LIG3P49916 AC093303.1-201ENST00000514549 295 ntBASIC5.14□□□□□ -1.59
LIG3P49916 RN7SKP260-201ENST00000516907 149 ntBASIC5.14□□□□□ -1.59
LIG3P49916 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.14□□□□□ -1.59
LIG3P49916 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 AC005868.1-201ENST00000536421 331 ntBASIC5.14□□□□□ -1.59
LIG3P49916 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.14□□□□□ -1.59
LIG3P49916 CYCSP40-201ENST00000575927 294 ntBASIC5.14□□□□□ -1.59
LIG3P49916 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC5.14□□□□□ -1.59
LIG3P49916 AC138761.3-201ENST00000579993 334 ntBASIC5.14□□□□□ -1.59
LIG3P49916 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.14□□□□□ -1.59
LIG3P49916 AC009570.1-201ENST00000609599 745 ntBASIC5.14□□□□□ -1.59
LIG3P49916 AC093799.2-201ENST00000610062 578 ntBASIC5.14□□□□□ -1.59
LIG3P49916 MIR4275-201ENST00000636486 87 ntBASIC5.14□□□□□ -1.59
LIG3P49916 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.14□□□□□ -1.59
LIG3P49916 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
LIG3P49916 AC087190.4-201ENST00000574616 8334 ntBASIC5.14□□□□□ -1.59
LIG3P49916 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
LIG3P49916 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.14□□□□□ -1.59
LIG3P49916 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
LIG3P49916 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIG3P49916 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.13□□□□□ -1.59
LIG3P49916 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LIG3P49916 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIG3P49916 RNU6-1249P-201ENST00000363237 111 ntBASIC5.13□□□□□ -1.59
LIG3P49916 SNORA23-201ENST00000365128 182 ntBASIC5.13□□□□□ -1.59
LIG3P49916 RNA5SP455-201ENST00000365190 119 ntBASIC5.13□□□□□ -1.59
LIG3P49916 Y_RNA.395-201ENST00000383945 109 ntBASIC5.13□□□□□ -1.59
LIG3P49916 RNU6-837P-201ENST00000391056 108 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AC110754.1-201ENST00000399740 601 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AL035079.1-201ENST00000405210 287 ntBASIC5.13□□□□□ -1.59
LIG3P49916 RNU6-712P-201ENST00000410558 100 ntBASIC5.13□□□□□ -1.59
LIG3P49916 RNU6-1304P-201ENST00000411374 106 ntBASIC5.13□□□□□ -1.59
LIG3P49916 BX682237.1-201ENST00000415016 335 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AC245054.2-201ENST00000415639 319 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG3P49916 GPM6BP2-201ENST00000432046 144 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG3P49916 CKS1BP5-201ENST00000434172 273 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AC004866.2-201ENST00000438285 481 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG3P49916 GPM6BP1-201ENST00000446387 144 ntBASIC5.13□□□□□ -1.59
LIG3P49916 KNOP1P3-201ENST00000446933 426 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LIG3P49916 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC5.13□□□□□ -1.59
LIG3P49916 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC5.13□□□□□ -1.59
LIG3P49916 VN1R105P-201ENST00000486595 910 ntBASIC5.13□□□□□ -1.59
LIG3P49916 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.13□□□□□ -1.59
LIG3P49916 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.13□□□□□ -1.59
LIG3P49916 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG3P49916 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LIG3P49916 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG3P49916 RPL23AP84-201ENST00000571193 464 ntBASIC5.13□□□□□ -1.59
LIG3P49916 MIR5690-201ENST00000583739 73 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AC016925.2-201ENST00000605108 242 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AL158032.1-201ENST00000605401 106 ntBASIC5.13□□□□□ -1.59
LIG3P49916 AC008013.2-202ENST00000637965 364 ntBASIC5.13□□□□□ -1.59
LIG3P49916 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIG3P49916 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIG3P49916 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.13□□□□□ -1.59
LIG3P49916 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
LIG3P49916 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.13□□□□□ -1.59
LIG3P49916 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
LIG3P49916 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.13□□□□□ -1.59
LIG3P49916 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LIG3P49916 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.12□□□□□ -1.59
LIG3P49916 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
LIG3P49916 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
LIG3P49916 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIG3P49916 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC5.12□□□□□ -1.59
LIG3P49916 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIG3P49916 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.12□□□□□ -1.59
LIG3P49916 Y_RNA.145-201ENST00000363527 102 ntBASIC5.12□□□□□ -1.59
LIG3P49916 Y_RNA.197-201ENST00000364004 102 ntBASIC5.12□□□□□ -1.59
LIG3P49916 MIR153-1-201ENST00000384914 90 ntBASIC5.12□□□□□ -1.59
LIG3P49916 SNORA68.2-201ENST00000391263 128 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AL645733.1-201ENST00000402250 217 ntBASIC5.12□□□□□ -1.59
LIG3P49916 RNA5SP111-201ENST00000411386 101 ntBASIC5.12□□□□□ -1.59
LIG3P49916 VDAC1P9-201ENST00000412766 841 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.12□□□□□ -1.59
LIG3P49916 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.12□□□□□ -1.59
LIG3P49916 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.12□□□□□ -1.59
LIG3P49916 RPL12P3-201ENST00000440080 396 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AC104058.1-201ENST00000448028 297 ntBASIC5.12□□□□□ -1.59
LIG3P49916 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms