Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 OR4G2P-202ENST00000641004 1759 ntBASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC28AQ8IWP9 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
CCDC28AQ8IWP9 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.81
CCDC28AQ8IWP9 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-1090P-201ENST00000364065 94 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 SNORD6-201ENST00000365444 73 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-946P-201ENST00000383878 107 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-1158P-201ENST00000391167 107 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 RNA5SP129-201ENST00000410276 118 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AL513331.1-201ENST00000411908 397 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AL606489.2-201ENST00000433886 234 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 NEFMP1-201ENST00000443423 1006 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-420P-201ENST00000458780 107 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 RNU7-182P-201ENST00000459009 62 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC092989.1-201ENST00000481235 277 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 MTAPP1-201ENST00000489154 819 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 SNORA40.12-201ENST00000516329 111 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 SNORA70.16-201ENST00000516390 95 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 SCARNA15.2-201ENST00000516409 127 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 RN7SKP260-201ENST00000516907 149 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-352P-201ENST00000516908 107 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 NRON-201ENST00000517270 370 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 IGKV2D-19-201ENST00000523346 262 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 RGS5-219ENST00000528019 512 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AL133241.1-201ENST00000556832 487 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 MIR5047-201ENST00000579212 100 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC104458.1-201ENST00000608243 463 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC109309.2-201ENST00000612597 332 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC016769.4-201ENST00000616893 535 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC28AQ8IWP9 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC006971.1-201ENST00000407916 4486 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 SNORA62.1-201ENST00000364287 154 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 IGKV1OR9-1-201ENST00000424370 284 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC016691.1-201ENST00000441321 413 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 HMGN2P7-201ENST00000456186 273 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC006512.1-201ENST00000468816 291 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC105417.1-201ENST00000514691 285 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 RNA5SP362-201ENST00000516048 118 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 RN7SKP289-201ENST00000517244 295 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC126177.5-201ENST00000549599 178 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms